YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC965.09
Organism:	Schizosaccharomyces pombe
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC965.09.

Description	E-value	Query Range	Subject Range
gi\|82744960, gi\|... - gi\|82744960\|ref\|ZP_00907474.1\| conserved hypothetical protein [Clostridium beijerincki NCIMB 8052], ...	274.0	[0..1]	[269..1]
gi\|21647505, gi\|... - gi\|21674330\|ref\|NP_662395.1\| carbon-nitrogen hydrolase family protein [Chlorobium tepidum TLS], gi\|2...	246.0	[0..3]	[270..6]
gi\|88925927, gi\|... - gi\|88944290\|ref\|ZP_01147613.1\| carbon-nitrogen hydrolase family protein [Desulfotomaculum reducens M...	242.0	[0..1]	[271..1]
gi\|60688591, gi\|... - gi\|60688591\|gb\|AAH91101.1\| Nit2-prov protein [Xenopus tropicalis], gi\|197246228\|gb\|AAI68796.1\| Nit2 ...	241.0	[0..2]	[267..2]
gi\|46312042, gi\|... - gi\|78066227\|ref\|YP_368996.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Burkh...	239.0	[0..3]	[271..6]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	239.0	[0..3]	[268..432]
gi\|67918649, gi\|... - gi\|67918649\|ref\|ZP_00512244.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	239.0	[0..3]	[269..6]
gi\|91223883, gi\|... - gi\|91223883\|ref\|ZP_01259147.1\| putative carbon-nitrogen hydrolase [Vibrio alginolyticus 12G01], gi\|9...	238.0	[0..3]	[269..5]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANIACVQM APKVCDVKHN LQKMSSYVHE VMESNPSTNL ILFPELITSG YECGNTFTQI  60
   61 AEIAGEGPSF KTMSNLAAKY HVNIIYGFPE KEEKQSNIIY NSCIYITENG NLGGVYRKVH 120
  121 LFDTERKHFK KGSDFPIFET SFGKLGVMIC WDTAFPEVAR IHALNGADLL VVATNWENPY 180
  181 SDDWDLVTKA RAFENCIPLV AANRVGTDEK LSFFGHSKII GPTGKVIKAL DEEKEGVISY 240
  241 TVDLDDAKPL RKNYYTFFED RMPDLYKRLL SP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.08563993959019	bayes_pls_golite062009
catalytic activity	1.64442398754697	bayes_pls_golite062009
binding	1.58491015879508	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
protein binding	0.276768866737717	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: