YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC694.03
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC694.03.

Description	E-value	Query Range	Subject Range
gi\|89318320, gi\|... - gi\|89341599\|ref\|ZP_01193842.1\| Cytidyltransferase-related:Probable nicotinate-nucleotide adenylyltra...	193.0	[0..29]	[248..47]
NADD_COREF - Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium efficiens (strain DSM 44549 / ... NADD_COREF - Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium efficiens GN=nadD PE=3 SV=2	191.0	[0..26]	[247..4]
gi\|25028813, gi\|... - gi\|25028813\|ref\|NP_738867.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium effi...	191.0	[0..26]	[247..19]
gi\|21325123, gi\|... - gi\|62391195\|ref\|YP_226597.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium glut...	190.0	[0..18]	[247..2]
gi\|54014851, gi\|... - gi\|54023343\|ref\|YP_117585.1\| nicotinic acid mononucleotide adenylyltransferase [Nocardia farcinica I...	190.0	[0..18]	[246..4]
gi\|77461194, gi\|... - gi\|77461194\|ref\|YP_350701.1\| nicotinic acid mononucleotide adenylyltransferase [Pseudomonas fluoresc...	189.0	[0..12]	[247..3]
gi\|83753743, gi\|... - gi\|83753746\|pdb\|1YUN\|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide Adenylyltransfera...	187.0	[0..31]	[247..22]
gi\|38200609 - gi\|38200609\|emb\|CAE50305.1\| Putative nicotinate-nucleotide adenylyltransferase [Corynebacterium diph... gi\|38234346 - gi\|38234346\|ref\|NP_940113.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium diph...	187.0	[0..25]	[246..1]
gi\|110817837, gi... - gi\|111018307\|ref\|YP_701279.1\| nicotinic acid mononucleotide adenylyltransferase [Rhodococcus jostii ...	187.0	[0..31]	[247..10]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQAKKYANL LDSFRSSTED ILLLERLEVS DKPIYVLDSS FNPPHFAHLG MCLSIPKGSQ  60
   61 LLLLLSITNA DKPVAPAAFN ERILMMEKLK TLIHNCTVSV AICKHALFVD KCRSISNKLG 120
  121 PREQVYLVGF DTLIRILDCK YYKEKAMQQV LQPFFSCSQI LCFSREVDGT TTDDQAQYLE 180
  181 KIKKSLLPNI PSQWSEKIKL TKLKGNVGFG VSSTRARQAI ISGDEETQRK IIPQEILNVI 240
  241 KVIQPYRHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1yulA
Description:	Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits