YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl51
Organism:	Schizosaccharomyces pombe
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl51.

Description	E-value	Query Range	Subject Range
gi\|85091765 - gi\|85091765\|ref\|XP_959062.1\| hypothetical protein NCU07549 [Neurospora crassa OR74A] gi\|32414711, gi\|... - gi\|32414711\|ref\|XP_327835.1\| hypothetical protein [Neurospora crassa], gi\|28920459\|gb\|EAA29826.1\| co...	198.0	[0..1]	[135..1]
gi\|194390486, gi... - gi\|56462543\|emb\|CAI10918.1\| mitochondrial ribosomal protein L43 [Homo sapiens], gi\|194390486\|dbj\|BAG...	195.0	[0..1]	[145..1]
gi\|49102208, gi\|... - gi\|67541468\|ref\|XP_664508.1\| hypothetical protein AN6904.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	194.0	[0..1]	[132..1]
gi\|38099185, gi\|... - gi\|39954264\|ref\|XP_364061.1\| hypothetical protein MGG_08906 [Magnaporthe grisea 70-15], gb\|EAA46563....	194.0	[0..1]	[136..1]
gi\|114632382 - gi\|114632382\|ref\|XP_001168998.1\| PREDICTED: mitochondrial ribosomal protein L43 isoform 1 [Pan trogl...	193.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIEIIPKIS IPKNGLGSFT RPCRRIEFSY CNWGGSSKGM KEFLSTKLES LAKESQDVEF  60
   61 HVTNRQGKHP LIRAYYNTGR EKVICTRKMS ASSIFQKAIL CRDSDGLKPR LIKYPVESTN 120
  121 PSVRGIWSPF SDQAKPHEIY KKKSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits