YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC24B10.11c
Organism:	Schizosaccharomyces pombe
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC24B10.11c.

Description	E-value	Query Range	Subject Range
gi\|42556325 - gi\|42556325\|gb\|AAS19751.1\| myosin heavy chain [Gasterosteus aculeatus]	154.0	[0..16]	[202..831]
gi\|47940239 - gi\|47940239\|gb\|AAH72094.1\| LOC432141 protein [Xenopus laevis]	148.0	[0..16]	[202..832]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	148.0	[0..16]	[202..1839]
gi\|47229711 - gi\|47229711\|emb\|CAG06907.1\| unnamed protein product [Tetraodon nigroviridis]	144.0	[0..16]	[202..838]
gi\|74180466 - gi\|74180466\|dbj\|BAE34176.1\| unnamed protein product [Mus musculus]	129.0	[0..16]	[173..835]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETAIRSRL TVEERPLKRL ISRCLGFAAQ NVDEANLRDL EIEFSALSAF WLRLQMQLDM  60
   61 NAKEVDVYEG ELKKTQTFCE AEKTEISQLE QDLLVAQEEL RKREQYDELA KPIMSKGLRS 120
  121 RTEQQESIGK LQDAIRELEE ENANYVKAWN LRKDIFDETL KQMNHLQSIL HPPSNPESDS 180
  181 EEGIASEGEN PSSSSSTQYK AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits