YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1539.01c
Organism:	Schizosaccharomyces pombe
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1539.01c.

Description	E-value	Query Range	Subject Range
gi\|115400141, gi... - gi\|115400141\|ref\|XP_001215659.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	50.0	[0..36]	[197..77]
gi\|70997880, gi\|... - gi\|70997880\|ref\|XP_753672.1\| RNase III domain protein [Aspergillus fumigatus Af293], gi\|66851308\|gb\|... gi\|159126595 - gi\|159126595\|gb\|EDP51711.1\| RNase III domain protein [Aspergillus fumigatus A1163]	49.0	[0..36]	[197..71]
gi\|49650963\|emb\|... - unnamed protein product [Yarrowia lipolytica CLIB122] gi\|50555369, gi\|... - gi\|50555369\|ref\|XP_505093.1\| YALI0F06732p [Yarrowia lipolytica], gi\|49650963\|emb\|CAG77900.1\| YALI0F0...	47.0	[0..42]	[193..62]
gi\|238504942, gi... - gi\|238504942\|ref\|XP_002383700.1\| RNase III domain protein [Aspergillus flavus NRRL3357], gi\|22068981... gi\|169780854 - gi\|169780854\|ref\|XP_001824891.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83773631 - gi\|83773631\|dbj\|BAE63758.1\| unnamed protein product [Aspergillus oryzae]	47.0	[0..36]	[197..70]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTRHCNRLG LQIENKFVFR SSSWNCVRRI GKIACNENKY RYEMTSTEED IDSFFSRVFG  60
   61 EKNYISDKSL REQIVTHKSY KHGLKRYNEP FVSVGNAVID VCLLNHYLES GNFSTIPSYK 120
  121 DLVNLRSPAR LAEVAKKWNP ETATQCILPL KGPNSPSSSS FEKIYSSIVS GLVAVVYFQK 180
  181 GGVEAMNFCK KSIISDLTKD FVRPNTVHNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.7
Match:	2a11A
Description:	Crystal Structure of Nuclease Domain of Ribonuclase III from Mycobacterium Tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits