YRC Public Data Repository - Protein Structure Prediction

Protein:	pvg3
Organism:	Schizosaccharomyces pombe
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pvg3.

Description	E-value	Query Range	Subject Range
gi\|157819061, gi... - gi\|62640938\|ref\|XP_217903.3\| PREDICTED: similar to beta-1,3-N-acetylglucosaminyltransferase protein ...	238.0	[0..27]	[354..73]
B3GN6_MOUSE - Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase OS=Mus musculu... gi\|157170414 - gi\|157170414\|gb\|AAI52836.1\| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 sy...	232.0	[0..27]	[349..73]
gi\|73995172 - gi\|73995172\|ref\|XP_543380.2\| PREDICTED: similar to beta-1,3-N-acetylglucosaminyltransferase bGnT-4 [...	232.0	[0..33]	[372..242]
gi\|114647497 - gi\|114647497\|ref\|XP_001166798.1\| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransfer...	229.0	[0..33]	[372..88]
gi\|21619494 - gi\|21619494\|gb\|AAH31399.1\| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [Homo sapie... gi\|123980762, gi... - gi\|123995587\|gb\|ABM85395.1\| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [synthetic...	229.0	[0..33]	[372..88]
gi\|109099096 - gi\|109099096\|ref\|XP_001097591.1\| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosami...	228.0	[0..33]	[372..88]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSNSKKKIF LYVLIAGVAT FSFAFLVLNR LQAEEHSLAY VENLFLDPFI KQNESLAHAN  60
   61 DRPFKLYLGI FSQAKNVDRR NFLRTDYNEY IKEFAVNDTV DVRFILGLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENEQELATIR EEQRTYGDLA VLPIPENVDA GKSIVYFQTF LEGYQPFPLF SELADNLIMP  60
   61 STQFHGSFIY NQSIKTYELP GMKEFQDLGE PKHDYDFIVK ADDDSFLNLP RLFEMLKEHV 120
  121 GKSRFYFGRD CTRRELPTAV RDFPYMCGFF YIVSPDMAYE VAKRRNIIIP FEDAQTGYSI 180
  181 YLSGNVKNAE FSKCTLYDLI LPNEGFNYRQ SYLRIDAIAV HKLKSIPLLS TVSNWFKKMY 240
  241 EHRANCSALI ETERLSCLQA TIPLPSLDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2j0aA
Description:	No description for 2j0aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits