YRC Public Data Repository - Protein Structure Prediction

Protein:	pal1
Organism:	Schizosaccharomyces pombe
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pal1.

Description	E-value	Query Range	Subject Range
gi\|46128697, gi\|... - gi\|46128697\|ref\|XP_388902.1\| hypothetical protein FG08726.1 [Gibberella zeae PH-1], gi\|42549580\|gb\|E...	312.0	[0..6]	[385..93]
gi\|51830279 - gi\|51830279\|gb\|AAU09708.1\| YDR348C [Saccharomyces cerevisiae]	263.0	[0..7]	[362..53]
gi\|145017407, gi... - gi\|86196487\|gb\|EAQ71125.1\| hypothetical protein MGCH7_ch7g532 [Magnaporthe grisea 70-15], gi\|3997062...	261.0	[0..6]	[403..25]
gi\|49090320, gi\|... - gi\|67524069\|ref\|XP_660096.1\| hypothetical protein AN2492.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	260.0	[0..6]	[399..38]
gi\|85074919 - gi\|85074919\|ref\|XP_965827.1\| hypothetical protein NCU00687 [Neurospora crassa OR74A] gi\|32408773, gi\|... - gi\|32408773\|ref\|XP_324867.1\| hypothetical protein [Neurospora crassa], gi\|28927640\|gb\|EAA36591.1\| pr...	244.0	[0..61]	[411..46]
gi\|44981628 - gi\|44981628\|gb\|AAS51378.1\| ACR152Wp [Ashbya gossypii ATCC 10895] gi\|45185838, gi\|... - gi\|45185838\|ref\|NP_983554.1\| ACR152Wp [Ashbya gossypii ATCC 10895], gi\|44981628\|gb\|AAS51378.1\| ACR15...	213.0	[0..35]	[333..92]
gi\|68468351, gi\|... - gi\|68468594\|ref\|XP_721616.1\| hypothetical protein CaO19.9227 [Candida albicans SC5314], gi\|68468351\|... orf19.9227 - orf19.1658 CGDID:CAL0000043 Assembly 19, Contig19-20123 (110162, 111199) CDS, translated using codon...	195.0	[0..31]	[309..2]
gi\|169763586 - gi\|169763586\|ref\|XP_001727693.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770721 - gi\|83770721\|dbj\|BAE60854.1\| unnamed protein product [Aspergillus oryzae]	191.0	[0..48]	[395..27]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVIENPFLS TATSSQTPQE DGVYTSSLHN SNNPFLAPKT ERVADPVMES MADDLFNSIQ  60
   61 KKKEPSPASS ASASPVKKSA EALAERSNSS MGTFDPPPRY SKIARARSTH VASSSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRSPSHNDSS PSTQSSLKSR GSIRRYKSVR EGSHRPGRSS KEPLDQIDRL DVTGLYGSGS  60
   61 FHHDGPFDAC RPHRNRNSKK APVAAFPKDS IANSIP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.334	N/A	N/A	a.39.1	EF-hand

Predicted Domain #3

Region A:
Residues: [213-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVGETYNDPS VPKDFSRKAI HESLRTKNIL QSPYKSVGIE EEFPSSGNND TPGLTDSTRI  60
   61 EGAMASKNAI ARNEEMLAME KAGLGRKNSL IRKLGLNRSA SMMSRTPNTL NRPSNYRSHS 120
  121 SMGTRRSPLN SPSQLDPISN ENESDTDDSN TGLRNRTSPT AAPPPPSRRK TGGLNTRPYP 180
  181 QHAESQMSLP LTAKERSKPK KMGFFRRLFH KKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits