YRC Public Data Repository - Protein Structure Prediction

Protein:	mug186
Organism:	Schizosaccharomyces pombe
Length:	586 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug186.

Description	E-value	Query Range	Subject Range
gi\|42554154, gi\|... - gi\|46125145\|ref\|XP_387126.1\| hypothetical protein FG06950.1 [Gibberella zeae PH-1], gi\|42554154\|gb\|E...	325.0	[0..4]	[582..4]
gi\|46100222, gi\|... - gi\|71020897\|ref\|XP_760679.1\| hypothetical protein UM04532.1 [Ustilago maydis 521], ref\|XP_402147.1\| ...	317.0	[0..5]	[582..7]
SNX41_EMENI - Sorting nexin-41 OS=Emericella nidulans GN=snx41 PE=3 SV=1 SNX41_EMENI - Sorting nexin-41 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)...	313.0	[0..4]	[582..4]
gi\|85109327 - gi\|85109327\|ref\|XP_962863.1\| hypothetical protein [Neurospora crassa OR74A] SNX41_NEUCR - Sorting nexin-41 - Neurospora crassa	301.0	[0..4]	[581..4]
gi\|83768603 - gi\|83768603\|dbj\|BAE58740.1\| unnamed protein product [Aspergillus oryzae] gi\|169772547 - gi\|169772547\|ref\|XP_001820742.1\| hypothetical protein [Aspergillus oryzae RIB40]	300.0	[0..4]	[585..4]
gi\|240107341 - gi\|240107341\|gb\|EER25526.1\| PX domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi\|90304829, gi\|... - gi\|90304829\|gb\|EAS34460.1\| hypothetical protein CIMG_05484 [Coccidioides immitis RS], gi\|119190873\|r...	297.0	[0..4]	[585..4]
SNX41_ASHGO - Sorting nexin-41 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SN... SNX41_ASHGO - Sorting nexin-41 OS=Ashbya gossypii GN=SNX41 PE=3 SV=1	255.0	[0..3]	[583..8]
gi\|88183943, gi\|... - gi\|88183943\|gb\|EAQ91411.1\| hypothetical protein CHGG_03346 [Chaetomium globosum CBS 148.51], gi\|1162...	250.0	[0..2]	[582..20]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	250.0	[0..159]	[582..1833]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFFEDNNPF SGSDNRSASS AVNVEPKVEP SQHQGSSSVK ENAISQPNES FQSRNMFFQK  60
   61 DVDSVVDSAL DPNGIVITGA MKAESGSHIV YIIKLQDSEI HHRYSEFASL RVQLSRLYPT 120
  121 CLVPPLPDKH KIMDYLINVT KNQRMSRMLE ERKRLLQLFL RRVAQHPILG LSEVFRKFLS 180
  181 RHVSWKEVLH SPPISCLPKD LLKAPPADPS SKENAELYKE LPIPSKTLVP RDNYDDVGKN 240
  241 FLMLEDTLQQ YSIVAQEESN LFNQIVLSNS KYCLAHSTLG AMFNALSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.045757
Match:	2dybA
Description:	No description for 2dybA was found.

Predicted Domain #2

Region A:
Residues: [289-586]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SESGKLLTAL EKVGQANDHT CLASIDFMHN FVIAVIEPLQ ELSKDAKNMR HIFIFRKMKF  60
   61 IQQVMVEELL TRKKSFLHLL ERRERHAARL QQAIGEVDGD VILNRESEAT LGVNNAQTSR 120
  121 STIPEEDPLF NDEESKEPSV PLMGTDQPLE NYHDGNGEQT EECLRDLRHN QSQDFETVSQ 180
  181 DTSLTSVTVL PRTIRDVFDR IRFVLNGLTD NNVEVSRHNN IGRTAESVTH LTDMLLITTK 240
  241 DVAFVTDRVN FEFQRYQDTH RQDLNRILNR LTDSHIDWAN RNLRIWNSVQ ESLKTYVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits