YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC227.06
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC227.06.

Description	E-value	Query Range	Subject Range
gi\|114556685 - gi\|114556685\|ref\|XP_001148917.1\| PREDICTED: Yip1 domain family, member 1 [Pan troglodytes]	252.0	[0..11]	[248..21]
HGNC:25231\|Ensem... - domain family, member 1 gi\|117644356, gi... - gi\|208965706\|dbj\|BAG72867.1\| Yip1 domain family, member 1 [synthetic construct], gi\|117644356\|emb\|CA... YIPF1 - Yip1 domain family, member 1	251.0	[0..11]	[248..21]
YIPF1_PONAB - Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1 YIPF1_PONPY - Protein YIPF1 - Pongo pygmaeus (Orangutan)	251.0	[0..11]	[248..21]
gi\|109004893 - gi\|109004893\|ref\|XP_001112998.1\| PREDICTED: similar to Yip1 domain family, member 1 [Macaca mulatta]	251.0	[0..10]	[248..20]
YIPF1_MOUSE - Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1	251.0	[0..10]	[248..20]
gi\|85105213 - gi\|85105213\|ref\|XP_961913.1\| hypothetical protein NCU05276 [Neurospora crassa OR74A] gi\|32408303, gi\|... - gi\|32408303\|ref\|XP_324633.1\| hypothetical protein [Neurospora crassa], gi\|28923498\|gb\|EAA32677.1\| hy...	249.0	[0..5]	[249..10]
gi\|42546010, gi\|... - gi\|46110150\|ref\|XP_382133.1\| hypothetical protein FG01957.1 [Gibberella zeae PH-1], gi\|42546010\|gb\|E...	248.0	[0..5]	[249..10]
gi\|145011676, gi... - gi\|39976057\|ref\|XP_369419.1\| hypothetical protein MGG_06045 [Magnaporthe grisea 70-15], gb\|EAA52917....	248.0	[0..5]	[249..10]
gi\|50751630 - gi\|50751630\|ref\|XP_422486.1\| PREDICTED: similar to hypothetical protein DJ167A19.1 [Gallus gallus]	246.0	[0..17]	[248..151]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHEIEIDSE ADLGRTTFEA EDLYKQRTPI TKPPAPRLQS RRASMQETPW TIKDSFNVET  60
   61 KDVVQRCIHT LIPTVNFFDV VDDRPDLYGP FWITTTVIQA LFFSNSITEY ARYATGHGTS 120
  121 GYSIKKLISA ASIIYGYTTI IAVLLWGILV WNKCNPKLLD CLCLYGYANI VWLPVSLATP 180
  181 PFGLLSTLAS HIVKYVLTGI GLLISIVFLT RNLYPICQQA GSNLCKLLLF GIIVFHCLLA 240
  241 LSLQLIFFS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.468521
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits