YRC Public Data Repository - Protein Structure Prediction

Protein:	dad2
Organism:	Schizosaccharomyces pombe
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dad2.

Description	E-value	Query Range	Subject Range
gi\|71004202, gi\|... - gi\|71004202\|ref\|XP_756767.1\| hypothetical protein UM00620.1 [Ustilago maydis 521], ref\|XP_398235.1\| ...	114.0	[0..3]	[93..39]
gi\|38108535, gi\|... - gi\|39968859\|ref\|XP_365820.1\| hypothetical protein MGG_02522 [Magnaporthe grisea 70-15], gb\|EAA54537....	112.0	[0..2]	[87..29]
gi\|40745998, gi\|... - gi\|67521882\|ref\|XP_659002.1\| hypothetical protein AN1398.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	112.0	[0..2]	[70..35]
gi\|85080891 - gi\|85080891\|ref\|XP_956625.1\| hypothetical protein NCU01841 [Neurospora crassa OR74A] gi\|28881231, gi\|... - gi\|32415603\|ref\|XP_328280.1\| predicted protein [Neurospora crassa], gi\|28917696\|gb\|EAA27389.1\| conse...	105.0	[0..2]	[88..23]
gi\|42545662, gi\|... - gi\|46109336\|ref\|XP_381726.1\| hypothetical protein FG01550.1 [Gibberella zeae PH-1], gi\|42545662\|gb\|E...	101.0	[0..2]	[89..28]
gi\|83766404 - gi\|83766404\|dbj\|BAE56547.1\| unnamed protein product [Aspergillus oryzae] gi\|169768156 - gi\|169768156\|ref\|XP_001818549.1\| hypothetical protein [Aspergillus oryzae RIB40]	94.0	[0..2]	[68..23]
gi\|90302101, gi\|... - gi\|90302101\|gb\|EAS31732.1\| hypothetical protein CIMG_07211 [Coccidioides immitis RS], gi\|119184935\|r...	92.0	[0..1]	[71..35]
gi\|169604594, gi... - gi\|169604594\|ref\|XP_001795718.1\| hypothetical protein SNOG_05311 [Phaeosphaeria nodorum SN15], gi\|11...	89.0	[0..1]	[90..26]
gi\|114188929, gi... - gi\|115402013\|ref\|XP_001217083.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	89.0	[0..2]	[70..35]
DAD2_ASHGO - DASH complex subunit DAD2 OS=Ashbya gossypii GN=DAD2 PE=3 SV=1 DAD2_ASHGO - DASH complex subunit DAD2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	82.0	[0..8]	[65..9]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQARIEEKQ KEYELICKLR DSSNDMVQQI ETLAAKLETL TDGSEAVATV LNNWPSIFES  60
   61 IQIASQHSGA LVRIPPSTSN TNASATEQGD VEEV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.657577
Match:	PF08654.1
Description:	No description for PF08654.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.781	N/A	N/A	a.135.1	Tetraspanin
View	Download	0.781	N/A	N/A	a.135.1	Tetraspanin
View	Download	0.660	N/A	N/A	a.48.4	Description not found.
View	Download	0.616	N/A	N/A	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.607	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.607	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.592	N/A	N/A	a.29.13	Description not found.
View	Download	0.586	N/A	N/A	a.60.6	DNA polymerase beta, N-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits