YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC191.05c
Organism:	Schizosaccharomyces pombe
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC191.05c.

Description	E-value	Query Range	Subject Range
gi\|93353374, gi\|... - gi\|94309522\|ref\|YP_582732.1\| nucleoside 2-deoxyribosyltransferase [Ralstonia metallidurans CH34], gi...	194.0	[0..17]	[200..1]
gi\|46130716, gi\|... - gi\|73540343\|ref\|YP_294863.1\| nucleoside 2-deoxyribosyltransferase [Ralstonia eutropha JMP134], gi\|72...	194.0	[0..17]	[190..1]
gi\|126196629, gi... - gi\|84324527\|ref\|ZP_00972584.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	190.0	[0..11]	[200..36]
gi\|107099135 - gi\|107099135\|ref\|ZP_01363053.1\| hypothetical protein PaerPA_01000144 [Pseudomonas aeruginosa PACS2]	190.0	[0..11]	[200..36]
gi\|126169546, gi... - gi\|84318463\|ref\|ZP_00966887.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	189.0	[0..11]	[200..36]
gi\|115589086, gi... - gi\|53726976\|ref\|ZP_00140562.2\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	187.0	[0..11]	[200..36]
gi\|11348788 - pir\|\|H83627 hypothetical protein PA0144 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9945974, gi\|1... - gi\|9945974\|gb\|AAG03534.1\|AE004452_6 hypothetical protein PA0144 [Pseudomonas aeruginosa PAO1], gi\|15...	187.0	[0..11]	[200..36]
gi\|152984082, gi... - gi\|94416058\|ref\|ZP_01295889.1\| hypothetical protein PaerP_01002138 [Pseudomonas aeruginosa PA7], gi\|...	184.0	[0..17]	[203..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGTAKVSIP KAQPHKVPCV YLAGDLVFRP NAIELFDELK EICKDAGVQG VAPFDGQEGV  60
   61 EEMAPGAETS LKIAELDRKL MDRCDGGIFC LDPFRRAPDM DPGTAVELGY MAAQGKPLAG 120
  121 FTTDGRMYPE KVRSYRKQAW GDALKPRFTK GGSGSMEDAD GLIVHSEGFL QNVMTEGFIR 180
  181 MSGGFVAVDF SIQEAFRTAI KDLAARLNSQ H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2a0kA
Description:	Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.8 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.448769452796145	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: