YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pvg5
Organism: Schizosaccharomyces pombe
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for pvg5.

Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPLRIFAG NGIGGWCLRL FLFGSLILLL RPLIFYSNTT MKKLKTEYPI YHRHLSALKR  60
   61 NFYYTMDAQL GGIRNVVLIN RPCFAASDNF LTLMGQNWYL KERNINVLSD ICFPLSNNAH 120
  121 DSLPTFNNGS DLFNPLYFAV LNAATPARFT FHLFNHVMDS VVPFDEAKKF KVRSFPINYA 180
  181 EYADDECQLA LKKIRPIPDK YLVSTRVLSD SRYLELSGAV VAFAPDASSS LLFELADIKQ 240
  241 HKKTSADILI FLSKDHNLPV SFYDNYKLKY TLHFWQPPSF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [281-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDSSTIDDQA KLLFDYVVSQ VVKYPYFVTD IYQIHLLGVY LNLKHVYLLE NDDVEDAYYE  60
   61 RQWMQAFQRK NVVAVAEELQ TALRIIEQWK QL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.900 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.900 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.883 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.883 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.868 a.24.28 Description not found.
View Download 0.844 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.834 a.24.4 Hemerythrin
View Download 0.807 a.24.17 Group V grass pollen allergen


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle