YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPCC553.06
Organism: Schizosaccharomyces pombe
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC553.06.

Description E-value Query
Range
Subject
Range
gi|32420433, gi|... - gi|32420433|ref|XP_330660.1| hypothetical protein [Neurospora crassa], gi|28927131|gb|EAA36088.1| hy...
gi|85117776 - gi|85117776|ref|XP_965324.1| hypothetical protein [Neurospora crassa OR74A]
305.0 [0..13] [269..439]
gi|67522453, gi|... - gi|67522453|ref|XP_659287.1| hypothetical protein AN1683.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
269.0 [0..6] [269..12]
gi|38197008 - gi|38197008|gb|AAH13028.2| RPN2 protein [Homo sapiens]
266.0 [0..66] [270..70]
gi|114681892 - gi|114681892|ref|XP_514629.2| PREDICTED: hypothetical protein [Pan troglodytes]
266.0 [0..66] [270..352]
gi|73991918 - gi|73991918|ref|XP_865758.1| PREDICTED: similar to ribophorin II precursor isoform 8 [Canis familiar...
266.0 [0..66] [270..84]
gi|74150483 - gi|74150483|dbj|BAE32275.1| unnamed protein product [Mus musculus]
264.0 [0..66] [270..448]
RPN2_RAT - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn...
263.0 [0..66] [270..420]

Back

Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGFFLIAGF LLFARALCAS WNVEEGTLQL SSQDLESENA YDLKFSQIQS STVYELTGDE  60
   61 TLNLKFTCIL NGTGAIPHQA HLLLSDTEHP TLAVIYPASV SQGGVASLEL RLFDIPTSLL 120
  121 RSDSTLTAKL LVASFGET

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPFSLPLGQL SINVPPSLYH KAEFSPLDEL SPKEVILHTF SPPPKRANYF LSICFSVSVV  60
   61 VSLIGLLGVW QKLLPKSNVY SVSSSSFART FGFASLAVAE ILLFIYWTSL SIFQFGAYAA 120
  121 GVAIMCGIAA KSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle