YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC557.05
Organism:	Schizosaccharomyces pombe
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC557.05.

Description	E-value	Query Range	Subject Range
ARRB1_MACFA - Beta-arrestin-1 OS=Macaca fascicularis GN=ARRB1 PE=2 SV=1	314.0	[0..61]	[417..35]
gi\|10880134, gi\|... - gi\|209944101\|gb\|ACI96306.1\| arrestin beta 1 transcript variant 2 [Homo sapiens], gi\|119595368\|gb\|EAW...	313.0	[0..61]	[417..35]
gi\|73987954 - gi\|73987954\|ref\|XP_542307.2\| PREDICTED: similar to arrestin beta 1 isoform B isoform 1 [Canis famili...	313.0	[0..61]	[417..30]
ARRB1_BOVIN - Beta-arrestin-1 OS=Bos taurus GN=ARRB1 PE=1 SV=1	308.0	[0..61]	[417..35]
gi\|148684447, gi... - gi\|80478797\|gb\|AAI08970.1\| Arrestin, beta 1 [Mus musculus], gi\|80474752\|gb\|AAI08971.1\| Arrestin, bet...	308.0	[0..61]	[417..35]
ARRB1_RAT - Beta-arrestin-1 OS=Rattus norvegicus GN=Arrb1 PE=1 SV=1	307.0	[0..61]	[417..35]

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Predicted Domain #1

Region A:
Residues: [1-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLWKKGKRF FRFSKEPVIT CINTSYAGKE IIFDLIANPQ METKDVNLTL DFDAPIFHRK  60
   61 AGIDGLLTLT NKSKVNEIQL ISIEVFIIGI CKHKFHSSTV FLCLGTHIME GQYIVPEELL 120
  121 DYAKKRGKNR IISIPNHSTV DIPFQVNFPK HVEVGPGRQI HSRVKVQYFA YANIIYQSAD 180
  181 KLRSRRECQE INVLPSISPS SFLDSPSIMC VSKQPDLKKD RQRKSATRIT VSLPRTDWLA 240
  241 GESVVSKIKI ENHSKSSIKT LKLCLYRRII GFDPPSWKTQ QMMSHLNLSR KNSEVSKTCK 300
  301 CLQKETIRCN KKSNCYNWNG IAALETYTTE CHIQIPDKEA TITVGSNFEV DHFLKISVGN 360
  361 KLWTLNRVEI PFKIISANSL SLEQENVFLN LEKLTNKASP HGLPISVRLG NSLSYDALSA 420
  421 ARRMRNTRYF LYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.69897
Match:	1jsyA
Description:	Arrestin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.7540809354913	bayes_pls_golite062009
protein binding	1.24728746254811	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: