YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC24B10.12
Organism:	Schizosaccharomyces pombe
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC24B10.12.

Description	E-value	Query Range	Subject Range
gi\|76628982 - gi\|76628982\|ref\|XP_597438.2\| PREDICTED: similar to PRPK (p53-related protein kinase)-binding protein...	206.0	[0..3]	[171..174]
gi\|38103809, gi\|... - gi\|39944424\|ref\|XP_361749.1\| hypothetical protein MG04223.4 [Magnaporthe grisea 70-15], gb\|EAA50464....	206.0	[0..3]	[172..41]
TPRKB_MOUSE - EKC/KEOPS complex subunit Tprkb OS=Mus musculus GN=Tprkb PE=1 SV=1	204.0	[0..3]	[171..7]
gi\|149036592, gi... - gi\|62422579\|ref\|NP_001013948.2\| Prpk (p53-related protein kinase)-binding protein [Rattus norvegicus...	204.0	[0..3]	[171..7]
CG121_GIBZE - EKC/KEOPS complex subunit CGI121 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL ... CG121_GIBZE - Protein CGI121 OS=Gibberella zeae GN=CGI121 PE=3 SV=1	202.0	[0..3]	[172..8]
TPRKB - TP53RK binding protein	194.0	[0..3]	[171..7]
gi\|148229425, gi... - gi\|28175286\|gb\|AAH45235.1\| MGC53277 protein [Xenopus laevis], gi\|148229425\|ref\|NP_001079622.1\| hypot...	194.0	[0..3]	[171..7]
CGI121 - Protein involved in telomere uncapping and elongation as component of the KEOPS protein complex with... CG121_YEAST - EKC/KEOPS complex subunit CGI121 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CGI121 ...	193.0	[0..2]	[172..5]
gi\|109103387 - gi\|109103387\|ref\|XP_001105548.1\| PREDICTED: similar to PRPK (p53-related protein kinase)-binding pro...	192.0	[0..3]	[171..7]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILPLFPETQ VHVFVYENVS NCAAIHEQLI SQNPIYDYAF LDAATILYKK QVYSAIIRAL  60
   61 EDRRDEQMKT KTIHSEVILS LSPKTEISSA FRQFSMTKKS KNIVVVKIDS KLTEEEEFER 120
  121 LDKLVEGNRV EFSDEELQKL IDFKVLKKNY KLDPSTLENP LASILSSIAL RGYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.154902
Match:	1zd0A
Description:	Crystal structure of Pfu-542154 conserved hypothetical protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits