YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC646.15c
Organism:	Schizosaccharomyces pombe
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC646.15c.

Description	E-value	Query Range	Subject Range
gi\|32417124, gi\|... - gi\|32417124\|ref\|XP_329040.1\| hypothetical protein [Neurospora crassa], gi\|28925630\|gb\|EAA34648.1\| hy... gi\|85111328 - gi\|85111328\|ref\|XP_963884.1\| hypothetical protein [Neurospora crassa OR74A]	389.0	[0..3]	[327..40]
gi\|115385937, gi... - gi\|115385937\|ref\|XP_001209515.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	388.0	[0..2]	[352..759]
gi\|70991316, gi\|... - gi\|70991316\|ref\|XP_750507.1\| peroxisomal membrane protein pex16 (peroxin-16) [Aspergillus fumigatus ... gi\|159130979 - gi\|159130979\|gb\|EDP56092.1\| peroxisomal membrane protein pex16 (peroxin-16) [Aspergillus fumigatus A...	372.0	[0..2]	[352..20]
gi\|83770970 - gi\|83770970\|dbj\|BAE61103.1\| unnamed protein product [Aspergillus oryzae] gi\|169764084 - gi\|169764084\|ref\|XP_001727942.1\| hypothetical protein [Aspergillus oryzae RIB40]	366.0	[0..2]	[352..20]
PEXG_YARLI, PEX1... - (P78980) Peroxisomal membrane protein PEX16 (Peroxin-16), Peroxisomal membrane protein PEX16 OS=Yarr... PEX16_YARLI - Peroxisomal membrane protein PEX16 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PEX16 PE=3 SV...	364.0	[0..3]	[352..19]
gi\|111070287 - gi\|111070287\|gb\|EAT91407.1\| hypothetical protein SNOG_01758 [Phaeosphaeria nodorum SN15]	358.0	[0..2]	[352..18]
gi\|86196129, gi\|... - gi\|86196129\|gb\|EAQ70767.1\| hypothetical protein MGCH7_ch7g174 [Magnaporthe grisea 70-15], gi\|3995548...	353.0	[0..2]	[327..40]
PEX16_ARATH - Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1	332.0	[0..8]	[348..2]
gi\|55246216, gi\|... - gi\|58376090\|ref\|XP_307896.2\| ENSANGP00000021719 [Anopheles gambiae str. PEST], gi\|55246216\|gb\|EAA037...	327.0	[0..6]	[346..7]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPLAYYEDQ LLKDEKSFLK VTEIERLLSY AAYLLPAEFR DDQLKSQTIT SILLLLHQFH  60
   61 TGLLFRKIAE LPKTEQAILK SERTQYLEYF RKKNPSFEKV SELLYFLNIS TFPIELVISK 120
  121 YNPSRQFLLR VHIMWTTGGD LPLSNPVLQR DFNVKTFIHL H

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKYSNSGSAV VLKNSKKVVP RLNTVNSSLD FLQNRTPRLS SILPDEIFTK RLPNLRIFSN  60
   61 FIKVCRPLIY MLFMWHWKRK QKSSSLKVRP WGPWIVAFVF EVISQLIDRR CESATSSRQG 120
  121 FGLERRTNQS QFQHFVVWAF TQGRFYDEFT KHWINRSLSW VNSIPVFGKY LLLSVEERQK 180
  181 SLENYISSET IKEALMTRTY RNPFLIYLTR CFSLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits