YRC Public Data Repository - Protein Structure Prediction

Protein:	mug180
Organism:	Schizosaccharomyces pombe
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug180.

Description	E-value	Query Range	Subject Range
gi\|21450339, gi\|... - gi\|21450339\|ref\|NP_659179.1\| hypothetical protein LOC234564 [Mus musculus], gi\|15488664\|gb\|AAH13479....	201.0	[0..18]	[267..47]
gi\|3062827, gi\|1... - gi\|3062827\|dbj\|BAA25691.1\| carboxylesterase precursor [Rattus norvegicus], gi\|149032321\|gb\|EDL87212....	200.0	[0..18]	[300..57]
gi\|25517648, gi\|... - pir\|\|AI1335 lipases homolog lmo2089 [imported] - Listeria monocytogenes (strain EGD-e), gi\|16411559... gi\|224501113 - gi\|224501113\|ref\|ZP_03669420.1\| hypothetical protein LmonFR_01090 [Listeria monocytogenes FSL R2-561... gi\|16804128 - gi\|16804128\|ref\|NP_465613.1\| hypothetical protein lmo2089 [Listeria monocytogenes EGD-e] gi\|133729270, gi... - gi\|254827023\|ref\|ZP_05231710.1\| hypothetical protein LmonocytogeFSL_01085 [Listeria monocytogenes FS...	198.0	[0..1]	[365..1]
gi\|2815412 - gi\|2815412\|dbj\|BAA24527.1\| carboxylesterase precursor [Cavia porcellus]	198.0	[0..18]	[312..48]
gi\|153203192, gi... - gi\|254931802\|ref\|ZP_05265161.1\| lipase [Listeria monocytogenes HPB2262], gi\|153203192\|ref\|ZP_0194451... gi\|254993321 - gi\|254993321\|ref\|ZP_05275511.1\| lipase [Listeria monocytogenes FSL J2-064] gi\|47091757, gi\|... - gi\|47091757\|ref\|ZP_00229552.1\| lipase [Listeria monocytogenes str. 4b H7858], gi\|47019768\|gb\|EAL1050...	197.0	[0..1]	[365..1]
gi\|217963753, gi... - gi\|217963753\|ref\|YP_002349431.1\| lipase [Listeria monocytogenes HCC23], gi\|217333023\|gb\|ACK38817.1\| ... gi\|254912646, gi... - gi\|254912646\|ref\|ZP_05262658.1\| lipase [Listeria monocytogenes J2818], gi\|153191609\|ref\|ZP_01938799.... gi\|46908324, gi\|... - gi\|46908324\|ref\|YP_014713.1\| lipase [Listeria monocytogenes str. 4b F2365], gi\|46881595\|gb\|AAT04890.... gi\|254826267 - gi\|254826267\|ref\|ZP_05231268.1\| lipase [Listeria monocytogenes FSL J1-194] gi\|254936973, gi... - gi\|254936973\|ref\|ZP_05268670.1\| lipase [Listeria monocytogenes F6900], gi\|153180115\|ref\|ZP_01933254.... gi\|47015802, gi\|... - gi\|47095798\|ref\|ZP_00233403.1\| lipase [Listeria monocytogenes str. 1/2a F6854], gi\|47015802\|gb\|EAL06... gi\|226224695, gi... - gi\|226224695\|ref\|YP_002758802.1\| lipase [Listeria monocytogenes Clip81459], gi\|225877157\|emb\|CAS0587... gi\|255520761 - gi\|255520761\|ref\|ZP_05387998.1\| lipase [Listeria monocytogenes FSL J1-175] gi\|254899213 - gi\|254899213\|ref\|ZP_05259137.1\| lipase [Listeria monocytogenes J0161]	197.0	[0..1]	[365..1]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLSLLYRI LTLPIILVGT TILYFTIGTN FPHDELRHNL LSTLFCSSML HLSKGLTVKD  60
   61 VRIFFHDSIG STLLKNRKKL NSENELPNYG EKFTHKYDNQ DMPDSVWLAK VNGMTKSDPI 120
  121 ILHLHGGMMA LPYDKVILVG LSNLYKLFST TMNRPPSILL VDYSLVSQGY TYPKQVRECL 180
  181 NVYQVLISKG FRNITVLGES AGGTLILSFL YQISELSKLN KVVWPKGVAL ISPWLDLTNA 240
  241 KKIGSYRAND GLDVICYETL NRFGKAYVNN EESLFTSSVV NINMNCDISI WSKIPPIQDG 300
  301 KVLVLFGENE VFRDEILSWT SKIGLLKAYP NRVLMDKQGI HIGLFLEESP SIGPGMTNLD 360
  361 IWKKKFSVNS LYTFLRETFE E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2j4cA
Description:	No description for 2j4cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits