YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC16C4.19
Organism:	Schizosaccharomyces pombe
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC16C4.19.

Description	E-value	Query Range	Subject Range
gi\|42544741, gi\|... - gi\|46109178\|ref\|XP_381647.1\| hypothetical protein FG01471.1 [Gibberella zeae PH-1], gi\|42544741\|gb\|E...	251.0	[0..7]	[181..159]
gi\|39977651, gi\|... - gi\|39977651\|ref\|XP_370213.1\| hypothetical protein MG06710.4 [Magnaporthe grisea 70-15], gb\|EAA55053....	221.0	[0..6]	[182..10]
gi\|85110388 - gi\|85110388\|ref\|XP_963435.1\| hypothetical protein NCU08506 [Neurospora crassa OR74A] gi\|38524211, gi\|... - gi\|38524211\|emb\|CAE75678.1\| hypothetical protein [Neurospora crassa], gi\|32418146\|ref\|XP_329551.1\| p...	215.0	[0..7]	[181..13]
gi\|6855454 - gi\|6855454\|emb\|CAB71193.1\| SPCC16C4.19 [Schizosaccharomyces pombe]	200.0	[0..44]	[184..1]
gi\|70992155, gi\|... - gi\|70992155\|ref\|XP_750926.1\| cullin binding protein CanA [Aspergillus fumigatus Af293], gi\|66848559\|...	78.0	[0..2]	[181..5]
gi\|119175884, gi... - gi\|90298879\|gb\|EAS28510.1\| predicted protein [Coccidioides immitis RS], gi\|119175884\|ref\|XP_00124009...	69.0	[0..6]	[183..7]
gi\|83768664 - gi\|83768664\|dbj\|BAE58801.1\| unnamed protein product [Aspergillus oryzae] gi\|238490584, gi... - gi\|238490584\|ref\|XP_002376529.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169772669 - gi\|169772669\|ref\|XP_001820803.1\| hypothetical protein [Aspergillus oryzae RIB40]	66.0	[0..2]	[181..5]
gi\|49640448 - gi\|49640448\|emb\|CAH02905.1\| KLLA0A07150p [Kluyveromyces lactis] gi\|50302761, gi\|... - gi\|50302761\|ref\|XP_451317.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640448\|emb\|CAH0290...	56.0	[0..13]	[181..22]
gi\|49529046, gi\|... - gi\|50294642\|ref\|XP_449732.1\| hypothetical protein CAGL0M08888g [Candida glabrata CBS138], gi\|4952904... gi\|49529046 - gi\|49529046\|emb\|CAG62708.1\| unnamed protein product [Candida glabrata]	53.0	[0..1]	[181..1]
gi\|111064695, gi... - gi\|169608193\|ref\|XP_001797516.1\| hypothetical protein SNOG_07164 [Phaeosphaeria nodorum SN15], gi\|11...	50.0	[0..9]	[181..13]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQERKLQFL LSIAAETYAI SPSLSSHYLR RMFSLLEEWN LETDPKTLLH GCSKCGSLFI  60
   61 FGRNIKLRTI SSERKARTDL KKGEVSRLGT NLEINCLVCS YVHEIPLGVP LRLHQSKQAL 120
  121 RAKAIAESSS TKLESRKSAH NAKVKQRQRL RASGLNGILD RKKKKDEVAK STSSLSLQDF 180
  181 MSPI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.26
Match:	1x0tA
Description:	Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits