YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC823.04
Organism:	Schizosaccharomyces pombe
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC823.04.

Description	E-value	Query Range	Subject Range
gi\|61554815 - gi\|61554815\|gb\|AAX46619.1\| testis intracellular mediator protein [Bos taurus]	242.0	[0..2]	[181..366]
gi\|114607495 - gi\|114607495\|ref\|XP_001136227.1\| PREDICTED: similar to testis intracellular mediator protein isoform...	242.0	[0..11]	[181..379]
gi\|109071199 - gi\|109071199\|ref\|XP_001091528.1\| PREDICTED: similar to testis intracellular mediator protein isoform...	240.0	[0..11]	[181..379]
gi\|73972850 - gi\|73972850\|ref\|XP_852194.1\| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 3 [...	237.0	[0..11]	[181..379]
gi\|50738604 - gi\|50738604\|ref\|XP_419323.1\| PREDICTED: similar to CDNA sequence BC011248 [Gallus gallus]	181.0	[0..17]	[178..460]
gi\|33989798 - gi\|33989798\|gb\|AAH06293.2\| C6orf153 protein [Homo sapiens]	169.0	[0..11]	[181..88]
RRP36_MOUSE - Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=1 SV=1	161.0	[0..2]	[181..63]
gi\|11595644 - gi\|11595644\|emb\|CAC18264.1\| conserved hypothetical protein [Neurospora crassa] RRP36_NEUCR - rRNA biogenesis protein rrp-36 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / D...	159.0	[0..11]	[187..148]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTQTTNQKQ LKVKHAPQEL SSKKPVSRFR EVISEPKKFT RDPRFDSLSG NLSKDKVKKN  60
   61 YGFLNEYRVS EIQQLRDELK ICKDQERAES IRQTLKSLLS KMERHLEEER AERVMHEFRA 120
  121 QEKERVKEGK KPFYLKRNEQ KKLIQMDKYK SMEGTKALDK YIEKKRRRRA QKEKKHLPRA 180
  181 RPSANSQNK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits