YRC Public Data Repository - Protein Structure Prediction

Protein:	rpc37
Organism:	Schizosaccharomyces pombe
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc37.

Description	E-value	Query Range	Subject Range
gi\|73958771 - gi\|73958771\|ref\|XP_850881.1\| PREDICTED: similar to DNA-directed RNA polymerases III 80 kDa polypepti...	287.0	[0..20]	[227..222]
gi\|114661526 - gi\|114661526\|ref\|XP_511201.2\| PREDICTED: hypothetical protein [Pan troglodytes]	284.0	[0..20]	[227..90]
gi\|7959163 - gi\|7959163\|dbj\|BAA95976.1\| KIAA1452 protein [Homo sapiens]	284.0	[0..20]	[227..44]
gi\|76653106 - gi\|76653106\|ref\|XP_583740.2\| PREDICTED: similar to DNA-directed RNA polymerases III 80 kDa polypepti...	283.0	[0..20]	[227..4]
gi\|12848773 - gi\|12848773\|dbj\|BAB28084.1\| unnamed protein product [Mus musculus]	282.0	[0..20]	[227..4]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSEDQAME EAKLRNDETE EQDPVVRTYP VFFSPGLRNN LLLNQFPLRP KNRTYSDANG  60
   61 EAPIDVRVKP KTGWMEVDVP IPTTKYYNED KAMKYGNGKK PIQTQTLSGR LQKPRTNLMV 120
  121 GLIRDGQFHI VPLRGLTQLR PSMKHVNEYT QKLKAAAGPS NSSSGTSTPR GPIRAVQVTA 180
  181 KQNTEAPKVS TTHIVRATEE EEWVELDCRP ERESESILKQ LECPIEHQPN ECAAVDEDYS 240
  241 FI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits