YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC790.03
Organism:	Schizosaccharomyces pombe
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC790.03.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	153.0	[0..1]	[248..122]
gi\|28922936, gi\|... - gi\|32412636\|ref\|XP_326798.1\| related to membrane protein [MIPS] [Neurospora crassa], gi\|28922936\|gb\|... gi\|85102797 - gi\|85102797\|ref\|XP_961391.1\| hypothetical protein NCU01305 [Neurospora crassa OR74A]	143.0	[0..30]	[242..258]
gi\|25489851 - pir\|\|E83827 hypothetical protein BH1421 [imported] - Bacillus halodurans (strain C-125) gi\|15613984, gi\|... - gi\|15613984\|ref\|NP_242287.1\| hypothetical protein BH1421 [Bacillus halodurans C-125], gi\|10174038\|db...	142.0	[0..6]	[213..178]
gi\|294845 - gi\|294845\|gb\|AAA02747.1\| membrane protein [Saccharum hybrid cultivar H65-7052] gi\|294845 - gi\|294845\|gb\|AAA02747.1\| membrane protein [Saccharum hybrid cultivar H65-7052]	142.0	[0..36]	[216..97]
gi\|68370064 - gi\|68370064\|ref\|XP_691851.1\| PREDICTED: similar to rhomboid family 1 [Danio rerio]	142.0	[0..41]	[213..762]
RBL1_ARATH - RHOMBOID-like protein 1 OS=Arabidopsis thaliana GN=RBL1 PE=2 SV=1	140.0	[0..7]	[218..49]
gi\|22777607, gi\|... - gi\|23099378\|ref\|NP_692844.1\| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831], gi\|22777...	139.0	[0..2]	[179..173]
RHDF1_RAT - Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1	139.0	[0..41]	[217..642]
gi\|91089053 - gi\|91089053\|ref\|XP_970266.1\| PREDICTED: similar to rhomboid [Tribolium castaneum]	139.0	[0..42]	[213..1268]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGRSKEFI LKLPIWTQII TYIAILVYAL SFFGISTGVL SLSWIGLLQK RQLYEIITYV  60
   61 TLHLSMLHIV FNFVSLLPAM SQFEKKQGTL ACILVTVIPY TLFPGIMHLI VYHFFLRKDY 120
  121 VSIAGLSGWA FAFISASCVH SPQRLISFFN LFSIPAYCFP IIYLIMTTIL VPKASFIGHA 180
  181 SGAVMGYCTP FMLGSIPLKS WAQNVDPIFQ SWVKNYHSFD QLSHAQLPIA EPLSTFSSFP 240
  241 GKGTRLGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	2nr9A
Description:	No description for 2nr9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits