YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1539.04
Organism:	Schizosaccharomyces pombe
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1539.04.

Description	E-value	Query Range	Subject Range
gi\|46121209, gi\|... - gi\|46121209\|ref\|XP_385159.1\| hypothetical protein FG04983.1 [Gibberella zeae PH-1], gi\|42552007\|gb\|E...	267.0	[0..1]	[263..1]
gi\|85108632 - gi\|85108632\|ref\|XP_962608.1\| hypothetical protein NCU06968 [Neurospora crassa OR74A] gi\|28924218, gi\|... - gi\|32413549\|ref\|XP_327254.1\| hypothetical protein [Neurospora crassa], gi\|28924218\|gb\|EAA33372.1\| co...	266.0	[0..13]	[275..13]
gi\|44984641 - gi\|44984641\|gb\|AAS53484.1\| AFR113Wp [Ashbya gossypii ATCC 10895] gi\|45198631, gi\|... - gi\|45198631\|ref\|NP_985660.1\| AFR113Wp [Ashbya gossypii ATCC 10895], gi\|44984641\|gb\|AAS53484.1\| AFR11...	262.0	[0..13]	[271..57]
gi\|38111460, gi\|... - gi\|39945772\|ref\|XP_362423.1\| hypothetical protein MGG_08006 [Magnaporthe grisea 70-15], gb\|EAA57037....	258.0	[0..13]	[255..13]
gi\|49100019, gi\|... - gi\|67541038\|ref\|XP_664293.1\| hypothetical protein AN6689.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	256.0	[0..1]	[254..1]
POM33_YEAST - Pore membrane protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POM33 PE... YLL023C - Protein of unknown function; highly conserved across species and orthologous to human TMEM33; may in...	245.0	[0..3]	[264..11]
gi\|88180320, gi\|... - gi\|88180320\|gb\|EAQ87788.1\| hypothetical protein CHGG_04407 [Chaetomium globosum CBS 148.51], gi\|1161...	238.0	[0..13]	[275..13]
gi\|115400017, gi... - gi\|115400017\|ref\|XP_001215597.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	236.0	[0..1]	[254..1]
gi\|73974942 - gi\|73974942\|ref\|XP_852860.1\| PREDICTED: similar to Transmembrane protein 33 (DB83 protein) [Canis fa...	236.0	[0..2]	[259..160]
gi\|90304581, gi\|... - gi\|90304581\|gb\|EAS34212.1\| hypothetical protein CIMG_05236 [Coccidioides immitis RS], gi\|119190377\|r...	233.0	[0..12]	[262..12]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKQRVVKP LKERVLPVVK NTQFVWFSGQ VIVLISSVLY ALQAIPFRSA PPFLFKSAAF  60
   61 GAIVAYAIVL YKTYSPNLTS RASWNKHFFA RLMLDDNVQY FILALSMLID RPILFSLAPY 120
  121 AIYATFHIST YLRSVLLPAI YPNISDAKTA SYASRVSNLL NQYTRSQFQP AMQLV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASLETFLLFR LFFGVFLRKN SISRLVGYIF FLRMRYTNSH FTRASIKAVS LRMDRLVADN  60
   61 RVPPVIKNAW HTFKTYVSKF GASPVGTAQS RPTASSSTTA PSST

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits