YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC24C6.10c
Organism:	Schizosaccharomyces pombe
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC24C6.10c.

Description	E-value	Query Range	Subject Range
gi\|27803010 - gi\|27803010\|emb\|CAD60713.1\| unnamed protein product [Podospora anserina]	465.0	[0..8]	[369..8]
gi\|39942958, gi\|... - gi\|39942958\|ref\|XP_361016.1\| hypothetical protein MGG_03559 [Magnaporthe grisea 70-15], gb\|EAA51964....	457.0	[0..10]	[370..14]
gi\|46123993, gi\|... - gi\|46123993\|ref\|XP_386550.1\| hypothetical protein FG06374.1 [Gibberella zeae PH-1], gi\|42551082\|gb\|E...	446.0	[0..11]	[365..13]
gi\|116179642, gi... - gi\|88184746\|gb\|EAQ92214.1\| hypothetical protein CHGG_00449 [Chaetomium globosum CBS 148.51], gi\|1161...	431.0	[0..1]	[366..1]
gi\|67526549, gi\|... - gi\|67526549\|ref\|XP_661336.1\| hypothetical protein AN3732.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	429.0	[0..9]	[368..6]
gi\|115389908, gi... - gi\|115389908\|ref\|XP_001212459.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	392.0	[0..9]	[370..6]
gi\|85092972 - gi\|85092972\|ref\|XP_959600.1\| hypothetical protein NCU11257 [Neurospora crassa OR74A] gi\|28921044, gi\|... - gi\|32421501\|ref\|XP_331194.1\| hypothetical protein [Neurospora crassa], gi\|28921044\|gb\|EAA30364.1\| co...	382.0	[0..10]	[374..10]
gi\|119194765, gi... - gi\|90306772\|gb\|EAS36403.1\| hypothetical protein CIMG_01757 [Coccidioides immitis RS], gi\|119194765\|r...	361.0	[0..5]	[370..8]
gi\|70992533, gi\|... - gi\|70992533\|ref\|XP_751115.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668487...	330.0	[0..1]	[366..127]
LDB17_YEAST - Protein LDB17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LDB17 PE=1 SV=1 LDB17 - Protein involved in the regulation of endocytosis; transiently recruited to actin cortical patches i...	329.0	[0..9]	[364..9]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTDVFYNL ENEKQFLAEI DELLTIPYEK NELEIGVSKF LSFINKYGEP YLITEFQLQR  60
   61 CMEKFLNSPL YQLDENAVLS IFYDCFFFLK EQQTLKFIII VFQSEIQENE YCLRLLASTG 120
  121 FIPVLIKAMK QFKDRSENVA FTSFRYALFL VYYICRSRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSPTDLVAID EYFLVNLFKT SEEAWNDEDM DSFGMCVLTL LSINEQFMLV RLASKGSFEI  60
   61 ANGIMDLLSS SKVDNGIYSE GLVFTLNREK DPRSRMLILK QLFLLFTTPA TYEIFYTNDL 120
  121 NVLIDIFIRE INNIPDELSD LRYAYLQVLI PLLENTQVRH PPHYKTKCIV DAVNNVLISH 180
  181 SKSSNMEDAR TTDVAIRVLE VPWLQQEMKS LGTAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.346787
Match:	PF09431.1
Description:	No description for PF09431.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits