YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC664.12c
Organism:	Schizosaccharomyces pombe
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC664.12c.

Description	E-value	Query Range	Subject Range
gi\|85116419 - gi\|85116419\|ref\|XP_965054.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926855, gi\|... - gi\|32414627\|ref\|XP_327793.1\| hypothetical protein [Neurospora crassa], gi\|28926855\|gb\|EAA35818.1\| hy...	121.0	[0..2]	[72..3]
gi\|39959096, gi\|... - gi\|39959096\|ref\|XP_364463.1\| hypothetical protein MG09308.4 [Magnaporthe grisea 70-15], gb\|EAA55501....	115.0	[0..1]	[74..1]
gi\|46108756, gi\|... - gi\|46108756\|ref\|XP_381436.1\| hypothetical protein FG01260.1 [Gibberella zeae PH-1], gi\|42547726\|gb\|E...	113.0	[0..2]	[76..3]
SDHF1_YEAST - Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20... gi\|190404684 - gi\|190404684\|gb\|EDV07951.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YDR379C-A - Putative protein of unknown function; identified by homology with other fungi; GFP-fusion protein lo... SDHF1_YEAS7 - Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789)...	109.0	[0..2]	[77..4]
gi\|44981682 - gi\|44981682\|gb\|AAS51432.1\| ACR206Cp [Ashbya gossypii ATCC 10895] gi\|45185892, gi\|... - gi\|45185892\|ref\|NP_983608.1\| ACR206Cp [Ashbya gossypii ATCC 10895], gi\|44981682\|gb\|AAS51432.1\| ACR20...	106.0	[0..2]	[76..4]
gi\|49643199 - gi\|49643199\|emb\|CAG99151.1\| KLLA0E02619p [Kluyveromyces lactis] gi\|50308127, gi\|... - gi\|50308127\|ref\|XP_454064.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643199\|emb\|CAG9915...	105.0	[0..2]	[77..4]
gi\|109458504 - gi\|109458504\|ref\|XP_579917.2\| PREDICTED: similar to Feline leukemia virus subgroup C receptor-relate...	105.0	[0..2]	[74..1047]
gi\|90302163, gi\|... - gi\|90302163\|gb\|EAS31794.1\| predicted protein [Coccidioides immitis RS], gi\|119185124\|ref\|XP_00124337...	102.0	[0..1]	[76..29]
gi\|114677073 - gi\|114677073\|ref\|XP_524230.2\| PREDICTED: hypothetical protein [Pan troglodytes]	102.0	[0..2]	[74..665]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSGLQRQV IHFYRRCLHA AKAKEQPYNE RWMAFVHQEF RKNQTISKRD FFYIEHLLRV  60
   61 GQRQYEAYSR PEVKDIHFS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.928	a.7.6	Ribosomal protein S20
View	Download	0.919	a.7.6	Ribosomal protein S20
View	Download	0.912	a.7.6	Ribosomal protein S20
View	Download	0.901	a.7.6	Ribosomal protein S20
View	Download	0.885	a.7.14	Description not found.
View	Download	0.883	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.883	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.869	a.7.14	Description not found.
View	Download	0.857	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.851	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits