YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC736.15
Organism:	Schizosaccharomyces pombe
Length:	351 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC736.15.

Description	E-value	Query Range	Subject Range
orf19.3149, orf1... - LSP1 CGDID:CAL0002322 Assembly 19, Contig19-10168 (8516, 7563) CDS, reverse complemented, translated... gi\|46431572, gi\|... - gi\|68491666\|ref\|XP_710374.1\| possible sphingolipid long chain base sensory protein [Candida albicans... gi\|238883571 - gi\|238883571\|gb\|EEQ47209.1\| sphingolipid long chain base-responsive protein PIL1 [Candida albicans W...	441.0	[0..2]	[315..1]
gi\|238484913, gi... - gi\|238484913\|ref\|XP_002373695.1\| cell wall integrity signaling protein Lsp1/Pil1, putative [Aspergil... gi\|171704179, gi... - gi\|171704179\|dbj\|BAG16417.1\| hypothetical protein [Aspergillus oryzae RIB40], gi\|169767974\|ref\|XP_00... gi\|83766313 - gi\|83766313\|dbj\|BAE56456.1\| unnamed protein product [Aspergillus oryzae]	439.0	[0..2]	[274..1]
gi\|44985873 - gi\|44985873\|gb\|AAS54484.1\| AGL006Cp [Ashbya gossypii ATCC 10895] gi\|45201090, gi\|... - gi\|45201090\|ref\|NP_986660.1\| AGL006Cp [Ashbya gossypii ATCC 10895], gi\|44985873\|gb\|AAS54484.1\| AGL00...	438.0	[0..2]	[302..1]
gi\|67538094, gi\|... - gi\|67538094\|ref\|XP_662821.1\| hypothetical protein AN5217.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	435.0	[0..2]	[274..1]
gi\|90299667, gi\|... - gi\|90299667\|gb\|EAS29298.1\| hypothetical protein CIMG_08044 [Coccidioides immitis RS], gi\|119178416\|r... gi\|240104855 - gi\|240104855\|gb\|EER23050.1\| sphingolipid long chain base-responsive protein PIL1, putative [Coccidio...	433.0	[0..2]	[273..1]
gi\|50423705, gi\|... - gi\|50423705\|ref\|XP_460437.1\| hypothetical protein DEHA0F01958g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656106 - gi\|49656106\|emb\|CAG88744.1\| DEHA2F01694p [Debaryomyces hansenii]	429.0	[0..2]	[292..1]
gi\|66848276, gi\|... - gi\|70991589\|ref\|XP_750643.1\| cell wall integrity signaling protein Lsp1/Pil1 [Aspergillus fumigatus ... gi\|159124203 - gi\|159124203\|gb\|EDP49321.1\| cell wall integrity signaling protein Lsp1, putative [Aspergillus fumiga...	428.0	[0..2]	[270..1]
gi\|190406894 - gi\|190406894\|gb\|EDV10161.1\| sphingolipid long chain base-responsive protein PIL1 [Saccharomyces cere... PIL1 - Primary component of eisosomes, which are large immobile cell cortex structures associated with endo... PIL1_YEAST - Sphingolipid long chain base-responsive protein PIL1 OS=Saccharomyces cerevisiae (strain ATCC 204508... gi\|151943363 - gi\|151943363\|gb\|EDN61676.1\| phosphorylation inhibited by long chain bases [Saccharomyces cerevisiae ... gi\|207345156 - gi\|207345156\|gb\|EDZ72067.1\| YGR086Cp-like protein [Saccharomyces cerevisiae AWRI1631]	425.0	[0..2]	[273..1]
gi\|39975401, gi\|... - gi\|39975401\|ref\|XP_369091.1\| sphingolipid long chain base sensory protein, putative [Magnaporthe gri...	423.0	[0..2]	[273..1]

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Predicted Domain #1

Region A:
Residues: [1-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNRAYSLRN SRAPTASQLL NPPPPSSSTR SGRLFAPLSH TMRINHAATF TPDLAKRLAV  60
   61 LVKMEKNVMR SMEVTIRGRR DCARQLSYWG EDCDDDISDV TDKLGVLFYE MAELENYLID 120
  121 RYDQYRMTLK SIRNIESSVQ PSREKKQKLL DQIYALKHKD PESPRLVTME QELVREEAAC 180
  181 LVAEAQLSNT TREKFKQAMT FNLDALHEHA EKLNLIATYG RHLLNLIDDT PVTPGEARPA 240
  241 YDGYETSRQI VMDAEHALSS WVPSQPAVNF VKPQIEDDAQ SDARSWNEYE AQGEPVPVEQ 300
  301 VTHLQDDVQS DTSEIIENEP GMHPHVHAER MSRIASESSD AVPQQTAVQV A

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.87
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits