YRC Public Data Repository - Protein Structure Prediction

Protein:	noc3
Organism:	Schizosaccharomyces pombe
Length:	747 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for noc3.

Description	E-value	Query Range	Subject Range
gi\|39940488, gi\|... - gi\|39940488\|ref\|XP_359781.1\| hypothetical protein MGG_04996 [Magnaporthe grisea 70-15], gb\|EAA52304....	457.0	[0..98]	[747..5]
gi\|88183524, gi\|... - gi\|88183524\|gb\|EAQ90992.1\| hypothetical protein CHGG_02927 [Chaetomium globosum CBS 148.51], gi\|1162...	448.0	[0..100]	[733..7]
gi\|42552439, gi\|... - gi\|46122175\|ref\|XP_385641.1\| hypothetical protein FG05465.1 [Gibberella zeae PH-1], gi\|42552439\|gb\|E...	440.0	[0..98]	[746..6]
gi\|111055117 - gi\|111055117\|gb\|EAT76237.1\| hypothetical protein SNOG_16412 [Phaeosphaeria nodorum SN15]	435.0	[0..118]	[733..25]
gi\|28394454 - gi\|28394454\|gb\|AAM08681.1\| Noc3p [Aspergillus fumigatus]	434.0	[0..100]	[743..8]
gi\|71002716, gi\|... - gi\|71002716\|ref\|XP_756039.1\| nuclear export protein Noc3 [Aspergillus fumigatus Af293], gi\|66853677\|... gi\|159130093 - gi\|159130093\|gb\|EDP55207.1\| nuclear export protein Noc3 [Aspergillus fumigatus A1163]	432.0	[0..100]	[743..8]
gi\|73998355 - gi\|73998355\|ref\|XP_534972.2\| PREDICTED: similar to CG1234-PA [Canis familiaris]	427.0	[0..2]	[746..238]
gi\|49106129, gi\|... - gi\|67900546\|ref\|XP_680529.1\| hypothetical protein AN7260.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	420.0	[0..114]	[743..17]
gi\|83771089 - gi\|83771089\|dbj\|BAE61221.1\| unnamed protein product [Aspergillus oryzae] gi\|169775775 - gi\|169775775\|ref\|XP_001822354.1\| hypothetical protein [Aspergillus oryzae RIB40]	415.0	[0..125]	[743..34]
gi\|50749514 - gi\|50749514\|ref\|XP_421670.1\| PREDICTED: similar to chromosome 10 open reading frame 117; AD24 protei...	414.0	[0..3]	[746..487]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARKNQKSP KPKVASSKLK NIKKSSKRNN SQSSTEPRKN ATSLDSKKTT KKGVALPEIA  60
   61 ERELTQEDIE FFNENPSSLK YLSSINPEDL GKKVEKGPRP DIYDLKKSQQ FELDTSRLSS 120
  121 DEESVLDYSK DSEDEQDYEL RPRVSSSWNN ESYNRLPIKT KDGLLQNVVA DVNNGEEFLS 180
  181 ESESEASLEI DSDIKDEKQK SLEEQKIAPE IPVKQQIKND KEALGIQAQQ LLEEPVENLH 240
  241 LIRNIFEKFD SPYITIKKLS LLTLLAVFRD IIPGYKIRPL SEEEQGTKLS KEVAQRWEYE 300
  301 QTLLKHYAKF LQTLETILKS FSSTLDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [328-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQLSLYQVAV RCCTKLIEQA SHFNLSEKLF ALAVRQISHK TKRPGFDGII NSLKNIFEED  60
   61 NLGKTSLKCV TILSRMFKQR NYDVLPDVYD LFLSVNILND MKIKDEAWQD DTTNFKKRKK 120
  121 DLPYLTKKAR KNYKETKKIT QEMKEADAVI TAQDKEKYQS EILKIIFITY FKTLQLKGKL 180
  181 IGNALEGVAR LSHLLNIEFL GDLLQVLREL VMDDT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [543-747]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFLPKDKSGV QATREALLTV STAFEIASAQ GVGKLNLDLD LGLFVQRLYK IIFPFSLNPD  60
   61 ADLNLKIKRL KDPDAPSKPF VVNATTEMEM LLKCFQVFFF KSKNISSSRL SSFSKRLAIA 120
  121 SMQLPEHSAS ADLALLKKLL SRYSKLSRLL TSEEQIGDGI YNPFIEDPDL SNSSTAVLYE 180
  181 PFLLKNHYSP AVSQSAKELL KSTSL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.638272
Match:	PF03914.8
Description:	No description for PF03914.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits