YRC Public Data Repository - Protein Structure Prediction

Protein:	sgo1
Organism:	Schizosaccharomyces pombe
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sgo1.

Description	E-value	Query Range	Subject Range
SGO2_SCHPO - Shugoshin-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgo2 PE=1 SV=1 sgo2 - shugoshin Sgo2	118.0	[0..18]	[112..10]
SGO1_EMENI - Shugoshin OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sgo... SGO1_EMENI - Shugoshin OS=Emericella nidulans GN=sgo1 PE=3 SV=1	114.0	[0..6]	[106..4]
SGO1_NEUCR - Shugoshin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) G... SGO1_NEUCR - Shugoshin OS=Neurospora crassa GN=sgo-1 PE=3 SV=1	112.0	[0..1]	[75..4]
gi\|38108536, gi\|... - gi\|39968861\|ref\|XP_365821.1\| hypothetical protein MG02523.4 [Magnaporthe grisea 70-15], gb\|EAA54538....	105.0	[0..6]	[74..4]
gi\|42545663, gi\|... - gi\|46109338\|ref\|XP_381727.1\| hypothetical protein FG01551.1 [Gibberella zeae PH-1], gi\|42545663\|gb\|E...	102.0	[0..6]	[74..4]
gi\|116199601, gi... - gi\|88179235\|gb\|EAQ86703.1\| hypothetical protein CHGG_07956 [Chaetomium globosum CBS 148.51], gi\|1161...	97.0	[0..6]	[75..4]
gi\|114188928, gi... - gi\|115402011\|ref\|XP_001217082.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114188928\|gb\|EA...	91.0	[0..6]	[108..4]
gi\|46100198, gi\|... - gi\|71021187\|ref\|XP_760824.1\| hypothetical protein UM04677.1 [Ustilago maydis 521], ref\|XP_402292.1\| ...	87.0	[0..19]	[71..49]
gi\|111066581 - gi\|111066581\|gb\|EAT87701.1\| hypothetical protein SNOG_05310 [Phaeosphaeria nodorum SN15]	84.0	[0..6]	[95..4]
gi\|90302102, gi\|... - gi\|90302102\|gb\|EAS31733.1\| hypothetical protein CIMG_07212 [Coccidioides immitis RS], gi\|119184937\|r...	78.0	[0..6]	[98..4]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFQFINSNI NNEDKLPMES LKKKFLKQNR EIIKINTQLS IKIRESENEI QDLIQENFTL  60
   61 KSYLVKLEAR FRNQS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.309804
Match:	PF07558.2
Description:	No description for PF07558.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTEDLLKNFF PEIQTIHKKI SQVQSLLKII EKKCSSDFLE ANVKSQFTTC ENKDSKEDYQ  60
   61 ILHNKRLEYV SFNDELKSLE TGQPLYCFQD FQKKVHGPPA LSEKPGKCIL KDKTNAHVNK 120
  121 IPQDEVNYSL PQKNITIFSK ELKENEFESI NEGETEEEKA KTSNVCVCIP CKSAEQITDL 180
  181 KGQATGDSSP CDFEESQPRI NGREKLRRSV KVINYAIPSL RTKLRRDFDL PSDRKRKRHP 240
  241 RGKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits