YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC8F11.06
Organism:	Schizosaccharomyces pombe
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC8F11.06.

Description	E-value	Query Range	Subject Range
gi\|42549000, gi\|... - gi\|46111833\|ref\|XP_382974.1\| hypothetical protein FG02798.1 [Gibberella zeae PH-1], gi\|42549000\|gb\|E...	302.0	[0..6]	[276..104]
BRL1 - Essential nuclear envelope integral membrane protein identified as a suppressor of a conditional mut... BRL1_YEAST - Nucleus export protein BRL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRL1 PE=1 SV...	294.0	[0..8]	[278..167]
orf19.7441 - orf19.7441 CGDID:CAL0005540 Assembly 19, Contig19-2514 (86895, 85969) CDS, reverse complemented, tra... gi\|238881048 - gi\|238881048\|gb\|EEQ44686.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68479868, gi\|... - gi\|68479868\|ref\|XP_716102.1\| hypothetical protein CaO19.7441 [Candida albicans SC5314], gi\|46437757\|...	260.0	[0..17]	[267..35]
gi\|40742244, gi\|... - gi\|67542037\|ref\|XP_664786.1\| hypothetical protein AN7182.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	253.0	[0..28]	[273..100]
gi\|83318123 - gi\|83318123\|ref\|XP_731458.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi\|23491510 - gi\|23491510\|gb\|EAA23026.1\| hypothetical protein [Plasmodium yoelii yoelii]	226.0	[0..60]	[276..119]
gi\|71005864, gi\|... - gi\|71005864\|ref\|XP_757598.1\| hypothetical protein UM01451.1 [Ustilago maydis 521], ref\|XP_399066.1\| ...	226.0	[0..79]	[272..185]
gi\|56494388 - gi\|56494388\|emb\|CAI05190.1\| conserved hypothetical protein [Plasmodium berghei] gi\|68066629 - gi\|68066629\|ref\|XP_675289.1\| hypothetical protein [Plasmodium berghei strain ANKA]	220.0	[0..60]	[286..99]
gi\|70932972 - gi\|70932972\|ref\|XP_737927.1\| hypothetical protein [Plasmodium chabaudi chabaudi] gi\|56513724 - gi\|56513724\|emb\|CAH83255.1\| conserved hypothetical protein [Plasmodium chabaudi chabaudi]	219.0	[0..60]	[276..32]
gi\|39955406, gi\|... - gi\|86196121\|gb\|EAQ70759.1\| hypothetical protein MGCH7_ch7g166 [Magnaporthe grisea 70-15], gi\|3995540...	215.0	[0..2]	[278..128]
gi\|29150096, gi\|... - gi\|32422305\|ref\|XP_331596.1\| hypothetical protein [Neurospora crassa], gi\|29150096\|emb\|CAD79657.1\| c... gi\|85091941 - gi\|85091941\|ref\|XP_959148.1\| hypothetical protein NCU09204 [Neurospora crassa OR74A]	208.0	[0..73]	[250..174]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMYVEDVPM PDIGPDSVLN TPIRPKYEIL KSKKKTQNEN DPEPMDISMS PDEKNLKKST  60
   61 VRRKLRKSKP NSSSNQVSSR TRALTKRS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSNAIIKAN NQDSVYVSDW TNVHRDIPIV VSGYLQLMFN ACVASIFLYF LFKIVFGIQN  60
   61 DVRNRVEYHK ILQEEQAADC QREYLSINCD SPGPAIFEVC QKLKQCKMES SNNVGSTKLA 120
  121 ALVFAEIIDA FISHISYKTM VFSLILVFGS LLTSNYAFGL YRARHSQNIH DYAANAIPAM 180
  181 IPSSRFLPSN LSDISNRNLI EAASQEEEI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits