YRC Public Data Repository - Protein Structure Prediction

Protein:	hrr1
Organism:	Schizosaccharomyces pombe
Length:	1015 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hrr1.

Description	E-value	Query Range	Subject Range
gi\|76633815 - gi\|76633815\|ref\|XP_589621.2\| PREDICTED: similar to Protein KIAA1404 [Bos taurus]	402.0	[0..30]	[965..429]
gi\|7243189 - gi\|7243189\|dbj\|BAA92642.1\| KIAA1404 protein [Homo sapiens]	398.0	[0..30]	[965..237]
gi\|109091643, gi... - gi\|109091645\|ref\|XP_001099091.1\| PREDICTED: zinc finger, NFX1-type containing 1 isoform 2 [Macaca mu...	397.0	[0..30]	[993..230]
gi\|73992561 - gi\|73992561\|ref\|XP_534452.2\| PREDICTED: similar to Protein KIAA1404 [Canis familiaris]	394.0	[0..30]	[965..240]
gi\|33086460, gi\|... - gi\|62646397\|ref\|XP_230878.3\| PREDICTED: similar to Ab1-133 [Rattus norvegicus], gi\|33086460\|gb\|AAP92...	387.0	[0..30]	[965..334]
ZNFX1_MOUSE - NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1 PE=1 SV=3	386.0	[0..30]	[965..223]
gi\|16924040 - gi\|16924040\|gb\|AAL31652.1\|AC079179_7 Putative DNA2-NAM7 helicase family protein [Oryza sativa] gi\|31429906, gi\|... - gi\|37530612\|ref\|NP_919608.1\| putative DNA2-NAM7 helicase family protein [Oryza sativa (japonica cult...	325.0	[0..27]	[995..318]
gi\|119183534, gi... - gi\|90301584\|gb\|EAS31215.1\| hypothetical protein CIMG_06694 [Coccidioides immitis RS], gi\|119183534\|r...	319.0	[0..101]	[984..15]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVQDEIWK LSTLDAWEMV NKNTEVVFDE IPEPETLSEM KRHPLYSNIF NADNNTTSFT  60
   61 EQIETSETSK TQDSEGNKVD KNLKENKSIR RKRSIDNDYE LSNVKRNDIT SGKNREFENE 120
  121 HHPASDTSSW RELPSIPTLE ELTSKSVELP SNNIYGGYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	2iykA
Description:	No description for 2iykA was found.

Predicted Domain #2

Region A:
Residues: [160-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFEDYLSIHY RLLREDAVSP LRESVLRYKV NPNYITGSSL AVYDHVRIDG YTISSSVIAA  60
   61 KLSFSVRAKK KIKWATSRRL ISGSLVLLSN DDFQTFRIGT VCARPLSGLN KHPHEIDVKF 120
  121 EDISISLDPR EEYVMIEATS GYWEAYKHVL RSLQRLSAST FPMKDYLVHC KSNQETAKHI 180
  181 QNNPRIRINS ILKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [354-882]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSQKIVNALE PFGPGEYILD SSQLKAYQSM LTKRLSIIQG PPGTGKSFVT LKAIETLLEN  60
   61 THSHVLPILV ACQTNHAVDQ ILIRLLHQGA SVMRLGSRTK DPEIAAVTIF QKAKHTKHSF 120
  121 KAAYNEIRHK KQRLIKQITN IMHNFNLEFV TLSYLHSKGI ITTSQLESLR NNTEWISSVA 180
  181 ENGEKTEEEL ISIWLGDAKV ELITPSEITD GFEEELQIDP EKLEEIQKEA EDSGALMEEE 240
  241 LRGKFINLRC KYLFSKLTTL HEKEIDTLLT IPNIWDIPEY SRGIIYCRWL ESAYAAAEKE 300
  301 LNRLYRFYLK VDRERIGFSN KRAAILLRGA NVIGMTTTGL NKYRDILERI NPKICFIEEA 360
  361 ADVLEGPIIP AVFPSLEQLV LIGDHKQLRP GCSTYALRQD PFNLSISMFE RLVENDMEYT 420
  421 RLTMQRRMHP QIRRLVSSVY EDLSDYEITK YWPSIPGMGE IRRFFLTHSR IEDNDGFASK 480
  481 INLFEAQMLV QFAVYLINNG VEPQKITCLT FYAAQKDLIE RLLSESLNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2pjrA
Description:	DEXX box DNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [883-1015]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKHFIKVATV DGYQGEENDV VLLSLVRNND RTEVGFLSSP HRVCVSLSRA RRGLFIFGNA  60
   61 QLVAESNPLW WDAINTLMND ETIQGLGDHL PLFTKDGTIY VNGKKSKQFQ FNFLTHSVDP 120
  121 VELLDVNMRL TRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.09691
Match:	2gjkA
Description:	No description for 2gjkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits