YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAP27G11.03
Organism:	Schizosaccharomyces pombe
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP27G11.03.

Description	E-value	Query Range	Subject Range
gi\|44982738 - gi\|44982738\|gb\|AAS52001.1\| ADR081Cp [Ashbya gossypii ATCC 10895] gi\|44982738, gi\|... - gi\|45187954\|ref\|NP_984177.1\| ADR081Cp [Ashbya gossypii ATCC 10895], gi\|44982738\|gb\|AAS52001.1\| ADR08...	425.0	[0..3]	[319..11]
gi\|73949144 - gi\|73949144\|ref\|XP_535189.2\| PREDICTED: similar to D123 gene product [Canis familiaris]	411.0	[0..5]	[319..106]
CD123_MACFA - Cell division cycle protein 123 homolog OS=Macaca fascicularis GN=CDC123 PE=2 SV=1 gi\|109088205 - gi\|109088205\|ref\|XP_001083055.1\| PREDICTED: similar to D123 gene product [Macaca mulatta]	396.0	[0..5]	[319..1]
CD123_MOUSE - Cell division cycle protein 123 homolog OS=Mus musculus GN=Cdc123 PE=1 SV=2	396.0	[0..5]	[319..1]
CD123_RAT - Cell division cycle protein 123 homolog OS=Rattus norvegicus GN=Cdc123 PE=1 SV=1	395.0	[0..5]	[319..1]
gi\|114629341, gi... - gi\|114629343\|ref\|XP_001136850.1\| PREDICTED: hypothetical protein isoform 9 [Pan troglodytes], gi\|114...	395.0	[0..5]	[319..1]
CDC123 - cell division cycle 123 homolog (S. cerevisiae)	394.0	[0..5]	[319..1]
CD123_BOVIN - Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1	394.0	[0..5]	[319..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLILTKNQV LHCQFSSWYS LFRKLTPKAK VIKPIPATVL KYLHEDSIYV EQPMNTVEEV  60
   61 DSEEDEESAP AYYPEREAIQ LIEKAIKELG GAVVPKLNWS TPKDALWITT TGSLKCTTAE 120
  121 EVLLLLKSSD FVAHDLNHA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDDCKDFDNA DGSVPKDFSF ELVLKEWFPM HASTEFRCFV KSKRLIAFCQ RDDNYYEFLK  60
   61 ENIDCYEKLI SDLLKKLDTF PDPDFVFDVY IHKDRAWLID INPFYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [246-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTDGLLFSWS ELESMNSENM KPEIRLIPKG SMPSTGSAKY YTNRVPFDMI AASEGENLLE  60
   61 FAQKWQDLTN KSNE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits