YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4B3.08
Organism:	Schizosaccharomyces pombe
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4B3.08.

Description	E-value	Query Range	Subject Range
gi\|42555011, gi\|... - gi\|46125757\|ref\|XP_387432.1\| hypothetical protein FG07256.1 [Gibberella zeae PH-1], gi\|42555011\|gb\|E...	301.0	[0..2]	[218..3]
gi\|40739506, gi\|... - gi\|67540284\|ref\|XP_663916.1\| hypothetical protein AN6312.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	291.0	[0..2]	[216..4]
gi\|38110727, gi\|... - gi\|39976949\|ref\|XP_369862.1\| hypothetical protein MG06377.4 [Magnaporthe grisea 70-15], gb\|EAA56406....	283.0	[0..2]	[199..3]
gi\|66853183, gi\|... - gi\|71001728\|ref\|XP_755545.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668531...	273.0	[0..2]	[217..3]
gi\|220694390, gi... - gi\|238496549\|ref\|XP_002379510.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169774839 - gi\|169774839\|ref\|XP_001821887.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769750 - gi\|83769750\|dbj\|BAE59885.1\| unnamed protein product [Aspergillus oryzae]	269.0	[0..1]	[217..3]
gi\|115383934, gi... - gi\|115383934\|ref\|XP_001208514.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	266.0	[0..2]	[216..4]
gi\|119190687, gi... - gi\|90304736\|gb\|EAS34367.1\| hypothetical protein CIMG_05391 [Coccidioides immitis RS], gi\|119190687\|r...	245.0	[0..2]	[200..4]
CTK3_YEAST - CTD kinase subunit gamma OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTK3 PE=1 SV=2 CTK3 - Gamma subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates both RNA pol II subunit R...	235.0	[0..1]	[204..1]
gi\|49067554, gi\|... - gi\|71003866\|ref\|XP_756599.1\| hypothetical protein UM00452.1 [Ustilago maydis 521], ref\|XP_398067.1\| ...	233.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPFEGRMTF LQLLGKLNAS QFSQIKPAQF AIKHLDLEED LYSCIWEELE SGSFNTRVNI  60
   61 MYFVDTLCEM CLKNGLTGGY LNMISRDICK LVQNVAPIGA AGAANAPEVR KVLQSLHEKK 120
  121 VIDDNQYKDA MATVEAHEQA SKSGDTSTSG AISKNDILKR IEEDRERHKR MRENIWAISE 180
  181 PELEAEIAWN TTQGITESDL ESLKDEYEKF NECLHATS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.39
Match:	2diwA
Description:	No description for 2diwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits