YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPBC1539.02
Organism: Schizosaccharomyces pombe
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1539.02.

Description E-value Query
Range
Subject
Range
IK - IK cytokine, down-regulator of HLA II
242.0 [0..1] [281..31]
gi|26325580 - gi|26325580|dbj|BAC26544.1| unnamed protein product [Mus musculus]
239.0 [0..1] [281..31]
gi|55731552 - gi|55731552|emb|CAH92485.1| hypothetical protein [Pongo abelii]
gi|55731552|emb|... - hypothetical protein [Pongo pygmaeus]
238.0 [0..1] [281..31]
gi|55236887, gi|... - gi|58390938|ref|XP_318083.2| ENSANGP00000017679 [Anopheles gambiae str. PEST], gi|55236887|gb|EAA132...
238.0 [0..1] [281..14]
RED_RAT - Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1
237.0 [0..1] [281..31]

Back

Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQDDFRKLL ATPKAETSQL KNFSSNKSQR LVFGRKHKTA KLEAPRALIK RKQLSHSTSS  60
   61 DITRHSNAKN SGKDTQFYEE PSSKQDIELH KLHEKLRNGQ ITTKEYSEKS KELGGDLNTT 120
  121 HLVRGLDRKL LEKVRSNELA LDDSLLSSSE KEVDEEADKL LEKVAEESSH PESVSILEEK 180
  181 KKIPLYPNGQ PKYRKILENG KKVKYLLDEN GEILKRLVKK EKKLKNDNER LENEH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [236-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTEKLNVNAN SLGKSFVKHD IPLPPVDLKL DIFEEVGEYD PFHENDKEPA ELKAKDAFQL  60
   61 KGHHELDAPY HKKVFDTNQY SDLKPTNFMS QIHRLAKVQE RKEEEERKKG KDGQIVDAGF 120
  121 GLVLSKDDTA DIHELGESDD DDNVKRRKTK G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle