YRC Public Data Repository - Protein Structure Prediction

Protein:	mmd1
Organism:	Schizosaccharomyces pombe
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mmd1.

Description	E-value	Query Range	Subject Range
gi\|113475509, gi... - gi\|71674567\|ref\|ZP_00672314.1\| Armadillo:HEAT:Caspase-1, p20:PBS lyase HEAT-like repeat [Trichodesmi...	230.0	[0..2]	[315..653]
gi\|72396494, gi\|... - gi\|73669332\|ref\|YP_305347.1\| hypothetical protein Mbar_A1826 [Methanosarcina barkeri str. Fusaro], g...	213.0	[0..2]	[315..729]
gi\|75703439, gi\|... - gi\|75909714\|ref\|YP_324010.1\| signal transduction protein [Anabaena variabilis ATCC 29413], gi\|757034...	205.0	[0..2]	[314..760]
gi\|17229395, gi\|... - gi\|17229395\|ref\|NP_485943.1\| hypothetical protein alr1903 [Nostoc sp. PCC 7120], gi\|17130993\|dbj\|BAB... gi\|25535206 - pir\|\|AI2043 hypothetical protein alr1903 [imported] - Nostoc sp. (strain PCC 7120)	203.0	[0..2]	[318..826]
gi\|53686724 - gi\|53686724\|ref\|ZP_00105992.2\| COG1413: FOG: HEAT repeat [Nostoc punctiforme PCC 73102]	175.0	[0..2]	[318..415]
gi\|106891503, gi... - gi\|148657496\|ref\|YP_001277701.1\| HEAT repeat-containing PBS lyase [Roseiflexus sp. RS-1], gi\|1485696...	163.0	[0..14]	[317..167]
gi\|68210403, gi\|... - gi\|91773182\|ref\|YP_565874.1\| HEAT repeat-containing protein [Methanococcoides burtonii DSM 6242], gi...	162.0	[0..10]	[315..164]
DOHH_CANAL - Deoxyhypusine hydroxylase OS=Candida albicans GN=LIA1 PE=3 SV=1 DOHH_CANAL - Deoxyhypusine hydroxylase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LIA1 PE=3 SV=1 gi\|238883621 - gi\|238883621\|gb\|EEQ47259.1\| hypothetical protein CAWG_05825 [Candida albicans WO-1]	161.0	[0..6]	[314..8]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEPVPQAV IDELERVLVN LDKSNPLSFR YRALFSLNAL AKKGDKRAVD AIYKAFIDDS  60
   61 ELLKHEMAYV MGQSGQQYAV QPLINIVNDL DQQVMVRHEA AEALGALGFT ESLPVLEKYY 120
  121 KEDPLAPIRE TCELAIARIQ WKNGLDKNNE KITPSMYDSV VDPAPPMPDH EQDVKSEVAK 180
  181 LRSEIVDQNL PLFYRYRVMF RLRNIGNEEA VLALTDGFKD PSPLFRHEIA FVFGQMIAPA 240
  241 SVPALIKVLE NTEEVPMVRH EAAEALGGIA NDECLPVLKK FSKDDVRVVA ESCIVALDMI 300
  301 EYEKSGDMEY AYIPKVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2jdqA
Description:	No description for 2jdqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits