YRC Public Data Repository - Protein Structure Prediction

Protein:	swi5
Organism:	Schizosaccharomyces pombe
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swi5.

Description	E-value	Query Range	Subject Range
gi\|114188860, gi... - gi\|115438356\|ref\|XP_001218045.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114188860\|gb\|EA...	57.0	[0..6]	[81..28]
gi\|238503498, gi... - gi\|238503498\|ref\|XP_002382982.1\| DNA repair protein Swi5/Sae3, putative [Aspergillus flavus NRRL3357... gi\|169765205 - gi\|169765205\|ref\|XP_001817074.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764928 - gi\|83764928\|dbj\|BAE55072.1\| unnamed protein product [Aspergillus oryzae]	56.0	[0..4]	[81..31]
gi\|159126242 - gi\|159126242\|gb\|EDP51358.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70998604, gi\|... - gi\|70998604\|ref\|XP_754024.1\| DNA repair protein Swi5/Sae3 [Aspergillus fumigatus Af293], gi\|66851660...	54.0	[0..13]	[81..43]
gi\|119181787, gi... - gi\|90300863\|gb\|EAS30494.1\| predicted protein [Coccidioides immitis RS], gi\|119181787\|ref\|XP_00124207...	51.0	[0..6]	[85..52]

Back

Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSQLESRV HLLEQQKEQL ESSLQDALAK LKNRDAKQTV QKHIDLLHTY NEIRDIALGM  60
   61 IGKVAEHEKC TSVELFDRFG VNGSE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.920819
Match:	PF07061.2
Description:	No description for PF07061.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.867	N/A	N/A	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits