YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC825.02
Organism:	Schizosaccharomyces pombe
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC825.02.

Description	E-value	Query Range	Subject Range
gi\|1749698, gi\|1... - gi\|1749698\|dbj\|BAA13906.1\| unnamed protein product [Schizosaccharomyces pombe], gi\|11282545\|pir\|\|T43...	167.0	[0..1]	[506..10]
gi\|91080399 - gi\|91080399\|ref\|XP_966891.1\| PREDICTED: similar to Phosphoribosylformylglycinamidine synthase (FGAM ...	140.0	[0..2]	[228..2464]
gi\|47224917 - gi\|47224917\|emb\|CAG06487.1\| unnamed protein product [Tetraodon nigroviridis]	138.0	[0..2]	[206..1819]
LRP4 - low density lipoprotein receptor-related protein 4	134.0	[0..2]	[234..116]
LRP4_RAT - Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2	133.0	[0..2]	[234..71]
LRP4_MOUSE - Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=2 SV=2	133.0	[0..2]	[234..71]
gi\|114637597 - gi\|114637597\|ref\|XP_508403.2\| PREDICTED: low density lipoprotein receptor-related protein 4 [Pan tro...	133.0	[0..2]	[234..246]
gi\|76636501 - gi\|76636501\|ref\|XP_580417.2\| PREDICTED: similar to Low-density lipoprotein receptor-related protein ...	132.0	[0..2]	[234..222]
gi\|45383257, gi\|... - gi\|45383257\|ref\|NP_989783.1\| low density lipoprotein receptor [Gallus gallus], gi\|31455368\|emb\|CAD56...	132.0	[0..2]	[186..210]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSQWYTLT APLLISSLYT VNAANDLRGV ASDKSDLYKP DAKGNWKCLG SDKLISFNQV  60
   61 NDDYCDCPDG SDEPGTSACH NGKFFCKNTG YISSYIPSNR V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.045757
Match:	1n7dA
Description:	Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [102-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDTVCDCCDG SDESLIKCPN TCAQKAREYL ATLEEHNRLV KNGLKIREQW ALESAKKTDE  60
   61 VKARYKEISD SLVAVSAEKT QLSEKVEKMK RSTDLGAEAV LPLDFQDLRV ALLSLVDERN 120
  121 EMQERLDILT NLLDELTLLY ETDKFDETMK EAILSFEDLK EQEIRRKVSS DDVHNYLESC 180
  181 NNHLSMLTGP SEDITFSSLI KDIKKILNSL VWNIKLSLIN FGILSPSASS TPLTDSESYR 240
  241 RFEAAQRDLD AAEENEKSLE KEHTKLMHEL EYHHGWDLYR AIKGMETKRE IGGYTYKVVF 300
  301 YENVFQDSIL LGNFASQEGN VLKYENGQSC WNGPHRSAIV TVECGVENEI VSVLEAQKCE 360
  361 YLIKMKSPAA CSPDQLKQSL LNTQNSANEN AVNGMEDKES SVDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits