YRC Public Data Repository - Protein Structure Prediction

Protein:	rpr2
Organism:	Schizosaccharomyces pombe
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpr2.

Description	E-value	Query Range	Subject Range
gi\|194677480, gi... - gi\|76650632\|ref\|XP_872832.1\| PREDICTED: similar to ribonuclease P 21kDa subunit isoform 1 [Bos tauru...	118.0	[0..3]	[102..42]
gi\|57209846, gi\|... - gi\|57209846\|emb\|CAI41822.1\| ribonuclease P 21kDa subunit [Homo sapiens], gi\|168986060\|emb\|CAQ08317.1...	114.0	[0..3]	[102..5]
gi\|56805545 - gi\|56805545\|dbj\|BAD83394.1\| hypothetical protein FLJ22638 [Sus scrofa]	113.0	[0..3]	[102..5]
gi\|68477228, gi\|... - gi\|68477228\|ref\|XP_717407.1\| likely RNase P integral subunit [Candida albicans SC5314], gi\|68477047\|... orf19.544, orf19... - orf19.544 CGDID:CAL0000202 Assembly 19, Contig19-10053 (137331, 136906) CDS, reverse complemented, t...	112.0	[0..2]	[103..18]
RPP21_MACMU - Ribonuclease P protein subunit p21 OS=Macaca mulatta GN=RPP21 PE=3 SV=1	112.0	[0..3]	[102..5]
gi\|149029330, gi... - gi\|50657376\|ref\|NP_001002831.1\| ribonuclease P 21 [Rattus norvegicus], gi\|46237678\|emb\|CAE84051.1\| h...	112.0	[0..3]	[102..5]
gi\|20306725 - gi\|20306725\|gb\|AAH28491.1\| Ribonuclease P 21 subunit (human) [Mus musculus]	111.0	[0..3]	[102..5]
gi\|50417088, gi\|... - gi\|57525982\|ref\|NP_001003530.1\| ribonuclease P 21 [Danio rerio], gi\|50417088\|gb\|AAH78300.1\| Ribonucl...	111.0	[0..3]	[103..5]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKSKDQHA RVSYLYQASQ LLFRNVQEPT LSRHYISTAK DVSQKSVMRI HPDIKRTICK  60
   61 GCNSLLVPGK SCSIRFEEPS RKNPSIDRVL WICKKCAFKK RFSDKSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1x0tA
Description:	Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits