YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC186.06
Organism:	Schizosaccharomyces pombe
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC186.06.

Description	E-value	Query Range	Subject Range
YY46_CLOAB, Y344... - (P58293) Hypothetical protein CAC3446, Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutyli... Y3446_CLOAB - Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 14...	173.0	[0..6]	[184..119]
gi\|194562756, gi... - gi\|84362457\|ref\|ZP_00987078.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Burkholderia dolosa ...	171.0	[0..5]	[182..117]
gi\|78067161, gi\|... - gi\|78067161\|ref\|YP_369930.1\| phenazine biosynthesis PhzC/PhzF protein [Burkholderia sp. 383], gi\|779...	170.0	[0..5]	[183..117]
gi\|67924482, gi\|... - gi\|67924482\|ref\|ZP_00517905.1\| Phenazine biosynthesis PhzC/PhzF protein [Crocosphaera watsonii WH 85...	170.0	[0..1]	[184..109]
gi\|219538820, gi... - gi\|68207458\|ref\|ZP_00559619.1\| Phenazine biosynthesis PhzC/PhzF protein [Desulfitobacterium hafniens... gi\|89333610, gi\|... - gi\|89894162\|ref\|YP_517649.1\| hypothetical protein DSY1416 [Desulfitobacterium hafniense Y51], gi\|893...	169.0	[0..7]	[184..119]
gi\|49258601, gi\|... - gi\|49258602\|pdb\|1QYA\|B Chain B, Crystal Structure Of E. Coli Protein Ydde, gi\|49258601\|pdb\|1QYA\|A Ch...	168.0	[0..7]	[184..126]
gi\|169888970, gi... - gi\|170081135\|ref\|YP_001730455.1\| hypothetical protein ECDH10B_1595 [Escherichia coli str. K-12 subst... YDDE_ECOLI - Uncharacterized isomerase yddE (EC 5.1.-.-) (ORFB) - Escherichia coli gi\|238900688, gi... - gi\|238900688\|ref\|YP_002926484.1\| hypothetical protein BWG_1287 [Escherichia coli BW2952], gi\|2388603... gi\|89108307, gi\|... - gi\|89108307\|ref\|AP_002087.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... EG11825 - PhzC-PhzF family protein / PhzC-PhzF family predicted enzyme, function unknown EG11825 - PhzC-PhzF family protein / PhzC-PhzF family predicted enzyme, function unknown	168.0	[0..7]	[184..116]
gi\|188493204, gi... - gi\|75512582\|ref\|ZP_00735105.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli 536...	167.0	[0..7]	[184..116]
gi\|149904784, gi... - gi\|82747153\|ref\|ZP_00909653.1\| Phenazine biosynthesis PhzC/PhzF protein [Clostridium beijerincki NCI...	166.0	[0..6]	[184..119]
gi\|75257732, gi\|... - gi\|75257732\|ref\|ZP_00729217.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli E22...	166.0	[0..7]	[184..116]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKLGYLFK LPSYKTSSIS PEVIVDLEKF LNLCEGSCSQ CNTPFCVDVG PRNAIIQLPN  60
   61 GADVLNLNPN FQAIFECCSK NSLTGVQIFG MYNDGTYELR SFCPVHGVNE DPANGSGAGS 120
  121 VGVFFALNNP SIISSDFAHL LFNQGKILGR NALIRVAIKL SANGLYDIHV GGGSKICISG 180
  181 TAEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1sdjA
Description:	X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.242057485683616	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: