YRC Public Data Repository - Protein Structure Prediction

Protein:	sdc1
Organism:	Schizosaccharomyces pombe
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdc1.

Description	E-value	Query Range	Subject Range
gi\|23957728, gi\|... - gi\|23957728\|ref\|NP_473185.2\| hypothetical protein [Plasmodium falciparum 3D7], gi\|15375380\|emb\|CAB39...	95.0	[0..4]	[80..1040]
gi\|114631551 - gi\|114631551\|ref\|XP_507876.2\| PREDICTED: similar to DPY30 domain containing 2 [Pan troglodytes]	94.0	[0..9]	[99..45]
gi\|23481827 - gi\|23481827\|gb\|EAA17988.1\| Plasmodium vivax PV1H14210_P [Plasmodium yoelii yoelii] gi\|82596828 - gi\|82596828\|ref\|XP_726423.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	93.0	[0..4]	[69..834]
KAD7_MOUSE - Adenylate kinase 7 OS=Mus musculus GN=Ak7 PE=1 SV=1	93.0	[0..4]	[50..568]
gi\|254675172, gi... - gi\|254675172\|ref\|NP_001101525.2\| adenylate kinase 7 [Rattus norvegicus], gi\|109479922\|ref\|XP_0010694...	92.0	[0..4]	[50..678]
gi\|73964448 - gi\|73964448\|ref\|XP_537550.2\| PREDICTED: similar to Putative adenylate kinase 7 [Canis familiaris]	92.0	[0..4]	[50..676]
gi\|76666111 - gi\|76666111\|ref\|XP_588569.2\| PREDICTED: hypothetical protein [Bos taurus]	91.0	[0..4]	[50..678]
gi\|15208111 - gi\|15208111\|dbj\|BAB63080.1\| hypothetical protein [Macaca fascicularis]	90.0	[0..4]	[50..482]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSAPARQY LNEKVTPVLL EGMKILARDR PENPLQFLGQ FLLDANANQQ KQKEIVNQPE  60
   61 PQQETPKADA DMSTPTMAEQ VQTSFSNPAS TPLTQTSSPS SNPGKNSAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.889	a.24.9	alpha-catenin/vinculin
View	Download	0.857	a.24.9	alpha-catenin/vinculin
View	Download	0.788	a.24.18	Description not found.
View	Download	0.779	a.74.1	Cyclin-like
View	Download	0.779	a.74.1	Cyclin-like
View	Download	0.773	a.24.3	Cytochromes
View	Download	0.773	a.24.3	Cytochromes
View	Download	0.765	a.24.3	Cytochromes
View	Download	0.702	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits