YRC Public Data Repository - Protein Structure Prediction

Protein:	mak10
Organism:	Schizosaccharomyces pombe
Length:	708 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mak10.

Description	E-value	Query Range	Subject Range
gi\|76625004 - gi\|76625004\|ref\|XP_873484.1\| PREDICTED: similar to corneal wound healing-related protein [Bos taurus...	754.0	[0..33]	[694..105]
gi\|39725955 - gi\|39725955\|ref\|NP_078911.2\| corneal wound healing-related protein [Homo sapiens]	746.0	[0..33]	[694..25]
gi\|114625347, gi... - gi\|114625347\|ref\|XP_001136900.1\| PREDICTED: corneal wound healing-related protein isoform 1 [Pan tro... NAA35_PONAB - N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Pongo abelii GN=NAA35 PE=2 SV=1 gi\|55728049 - gi\|55728049\|emb\|CAH90777.1\| hypothetical protein [Pongo abelii] NAA35 - N(alpha)-acetyltransferase 35, NatC auxiliary subunit	746.0	[0..33]	[694..25]
NAA35_MACFA - N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Macaca fascicularis GN=NAA35 PE=2 SV=1 gi\|109111989 - gi\|109111989\|ref\|XP_001107941.1\| PREDICTED: similar to corneal wound healing-related protein [Macaca...	744.0	[0..33]	[694..25]
gi\|73946413, gi\|... - gi\|73946417\|ref\|XP_856295.1\| PREDICTED: similar to corneal wound healing-related protein isoform 4 [...	743.0	[0..33]	[694..25]
NAA35_MOUSE - N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Mus musculus GN=Naa35 PE=1 SV=1	740.0	[0..33]	[694..25]
NAA35_CHICK - N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Gallus gallus GN=NAA35 PE=2 SV=1	736.0	[0..27]	[694..19]
NAA35_RAT - N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Rattus norvegicus GN=Naa35 PE=1 SV=1	730.0	[0..33]	[694..25]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKESLSLL NSMQGNVKIG NVEPAKGNEG YVDNAGYVDC TKSYFEATKS LKEEQLVCDP  60
   61 KFTLLDSISA FEIMEPKMDS GIDYQPLRVD FSRDLSYLEI LALMDLIVSA EKEWHYGSPL 120
  121 SESLLCSAHV FSICKSPISQ VGDSGFSSGS GRNTTDIVLF PFVLAVIKCC DIVHREFLMG 180
  181 NLYDEEDISS FSYHMSFLQN YPIEKLNYLL QSSIEYLASE VIKFSAELRQ IIEGILNRIQ 240
  241 LRIGILRVYE RSDIKTTIDA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	105.568636
Match:	PF04112.4
Description:	No description for PF04112.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [261-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHLIKNLVPE IQNTVSVVDS SIKESILKQY WDFRVQAQLV ATAPVRNIPP TGIEHSYQRI  60
   61 LYFADDMLLI LNSHTLASSL AVYQFCLDFT RLNRTPEPYV RSSLQALITA NNAVNLRDQP 120
  121 TSYMLECIRE FSGLPSNFYN PNTRTVIEKN SISSAYGPLV ESLIAHSTNI MVDLVRICSH 180
  181 NPCRFRRNLI NLLPEITVAH FEAEALDLKF VAKSLPSNGP FSSFIYHVKL NAIEHILLSS 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [501-708]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEQKLHQPYQ WPHFFAVLDH VFSIHQTHLE LHGKDRNTPP MAKTFVTYLH RILNAIKETY  60
   61 SGYLLLTVLC MRLNIIKTPS FTLDEKIQES YYMAHYRPLI NLRQPKPLLR SEADCIIKNL 120
  121 QNFSTDDLII KSNEKFTAAK NSLINVIKSG FEQNEFINPY FLQTNYLKNL LCCCITNLVS 180
  181 LAILSKDHSA NLKIVEIPGN PLPSLSRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits