YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC23C4.05c
Organism:	Schizosaccharomyces pombe
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23C4.05c.

Description	E-value	Query Range	Subject Range
gi\|28918584, gi\|... - gi\|40882205\|emb\|CAF06031.1\| related to brefeldin A resistance protein [Neurospora crassa], gi\|324063... gi\|85085366 - gi\|85085366\|ref\|XP_957492.1\| hypothetical protein NCU04415 [Neurospora crassa OR74A]	409.0	[0..27]	[404..31]
gi\|39940152, gi\|... - gi\|39940152\|ref\|XP_359613.1\| hypothetical protein MGG_05164 [Magnaporthe grisea 70-15], gb\|EAA52472....	402.0	[0..27]	[395..30]
gi\|49095232, gi\|... - gi\|67537540\|ref\|XP_662544.1\| hypothetical protein AN4940.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	402.0	[0..27]	[402..33]
gi\|46140175, gi\|... - gi\|46140175\|ref\|XP_391778.1\| hypothetical protein FG11602.1 [Gibberella zeae PH-1], gi\|42555944\|gb\|E...	388.0	[0..27]	[407..32]
gi\|169770581 - gi\|169770581\|ref\|XP_001819760.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767619 - gi\|83767619\|dbj\|BAE57758.1\| unnamed protein product [Aspergillus oryzae]	356.0	[0..27]	[395..38]
gi\|66852208, gi\|... - gi\|70999708\|ref\|XP_754571.1\| meiotic sister chromatid recombination protein Ish1/Msc1, putative [Asp...	354.0	[0..35]	[380..59]
gi\|115396238, gi... - gi\|115396238\|ref\|XP_001213758.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	351.0	[0..27]	[382..33]
gi\|90302959, gi\|... - gi\|90302959\|gb\|EAS32590.1\| hypothetical protein CIMG_03614 [Coccidioides immitis RS], gi\|119187133\|r...	329.0	[0..40]	[405..44]
ISH1_SCHPO - Stress response protein ish1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ish1 PE=1 SV=... ish1 - LEA domain protein	292.0	[0..26]	[411..130]
gi\|1145409 - gi\|1145409\|gb\|AAC49262.1\| orf of unknown function; Method: conceptual translation supplied by author	290.0	[0..26]	[403..130]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPRFLLHGA LLALGIQLCL SIGKITGHIS SIEATAADIH DAPSTTTKYV QRTVYAGREK  60
   61 GKIGGPADSW PQRKLDDFLQ NHGVKSLDVP PIETPSQFWR KPLQYVSKVT DKCKSFYEKE 120
  121 KNHASHNAQK LDVWIFNSWT NSELSRWLIK NKYEVPEPGT REQLLETVFQ ASMGDAISTN 180
  181 DELESWSNNL LLSMLDQKNI T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [202-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPIGASHDDL IVLARRYYDI EERKSQDKVT NITDSQPAPY MKEIIHLWSD GRLIDFLRER  60
   61 NIPISVLSPR ETLLKEAYAN RFTPRVMIAS NVLDGWSSED LLDWIWKYNK RGSIFSHVAY 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [322-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSRHELIHAA KLFYMDVASE WSSSDMASLN DSLYSHPSVS KQSTWTEEEL KEELESFGEL  60
   61 VPVPFSSTKA FERLLPHLYY YLRGPAFLNR IHYWQTFLGN SLKRAFVLSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits