YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC24C6.08c
Organism:	Schizosaccharomyces pombe
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC24C6.08c.

Description	E-value	Query Range	Subject Range
CE37006 - status:Partially_confirmed UniProt:Q6AHQ4 protein_id:AAT81196.1	377.0	[0..1]	[360..1]
FLCN_RAT - Folliculin OS=Rattus norvegicus GN=Flcn PE=1 SV=1	339.0	[0..1]	[360..1]
FLCN_BOVIN - Folliculin OS=Bos taurus GN=FLCN PE=2 SV=1	331.0	[0..1]	[360..1]
FLCN_XENTR - Folliculin OS=Xenopus tropicalis GN=flcn PE=2 SV=1	325.0	[0..1]	[360..1]
gi\|115528343, gi... - gi\|189217734\|ref\|NP_001121308.1\| hypothetical protein LOC100158392 [Xenopus laevis], gi\|115528343\|gb...	325.0	[0..1]	[360..1]
FLCN - folliculin	324.0	[0..1]	[360..1]
gi\|109113457 - gi\|109113457\|ref\|XP_001088928.1\| PREDICTED: similar to folliculin isoform 1 [Macaca mulatta]	323.0	[0..1]	[360..1]
gi\|114668925, gi... - gi\|114668927\|ref\|XP_001161086.1\| PREDICTED: folliculin isoform 2 [Pan troglodytes], gi\|114668925\|ref...	321.0	[0..1]	[360..1]

Back

Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVFALGHF CEAEGPSIIF CTQKLHRSTV SKFFEHPTSK RSIGVTENGN DSPEAFKNEL  60
   61 DNRNNADSQS LQSSTESLFK ADSEDYLCKK VSKGPESPRV NSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNSYSRNQSP ISRKSSCVTC STVLPLEFSV PDVQPRLYTN SSTNPDVLYM SSQHPHTQQR  60
   61 YSTLKRLMVR CLSCEYSTLS EASDSMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [191-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPLFFGDQDN GYVISQSFSL RDPSARGGLR RYAIIATCPN QLDLILRYSF ISEKFLHIVQ  60
   61 FLRISSFNTK NDYSSSRSKT TASSSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [277-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTFASPSFNI SSLSGSSNIG TAPSYEISSS IGANVSSLAH TQRLPSFSFL RRRDDIGEGR  60
   61 SLVDITCWDG IFVGLHSSFS WILEVWDLLV V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.39.1	EF-hand

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits