YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC530.09c
Organism:	Schizosaccharomyces pombe
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC530.09c.

Description	E-value	Query Range	Subject Range
gi\|67527636, gi\|... - gi\|67527636\|ref\|XP_661699.1\| hypothetical protein AN4095.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	271.0	[0..43]	[295..33]
MPRD_MOUSE - Cation-dependent mannose-6-phosphate receptor OS=Mus musculus GN=M6pr PE=1 SV=1	250.0	[0..57]	[289..50]
MPRD_RAT - Cation-dependent mannose-6-phosphate receptor OS=Rattus norvegicus GN=M6pr PE=1 SV=1	250.0	[0..57]	[289..50]
gi\|90085425 - gi\|90085425\|dbj\|BAE91453.1\| unnamed protein product [Macaca fascicularis] CCDS8598.1_1 - null gi\|109095542, gi... - gi\|109095544\|ref\|XP_001113952.1\| PREDICTED: cation-dependent mannose-6-phosphate receptor isoform 6 ...	247.0	[0..59]	[289..52]
M6PR - mannose-6-phosphate receptor (cation dependent) gi\|114643402, gi... - gi\|114643402\|ref\|XP_001137569.1\| PREDICTED: cation-dependent mannose-6-phosphate receptor isoform 4 ...	246.0	[0..59]	[289..51]
MPRD_BOVIN - Cation-dependent mannose-6-phosphate receptor OS=Bos taurus GN=M6PR PE=1 SV=1	244.0	[0..57]	[289..54]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTCLINV LAGLTLFSQF QRAFGLTITR RGFKVQESDE EPFCALHHPN TGEYFDLSGL  60
   61 IRDNTSEKGD YSVNGYDFGT NFSINLCHPV VSNLTNYTVE GDVSSEDSIG GFFTVEDDDL 120
  121 YSIGQAAYKP YFRGKKLIMQ LDNGSLCPKS NHIRMSTLIS FTCNRDPYTA PSVITYVGNL 180
  181 NDCAFFFEWK TIHAC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1q25A
Description:	Crystal structure of N-terminal 3 domains of CI-MPR
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [196-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTVKKDSTLN PVSVFLLFCA IAFLAYFVGG FVYQRVVLNA RGLRQIPNYE MWRSLFGFIS  60
   61 DIVIILYSSI LSILPSSITR MRGNRRNIDY VEDALIDDID T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits