YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC830.03
Organism:	Schizosaccharomyces pombe
Length:	736 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC830.03.

Description	E-value	Query Range	Subject Range
gi\|109477749, gi... - gi\|149024719\|gb\|EDL81216.1\| nucleolar protein 9 [Rattus norvegicus], gi\|109477749\|ref\|XP_001076353.1...	363.0	[0..109]	[719..87]
NOL9_MOUSE - Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Mus musculus GN=Nol9 PE=1 SV=1	359.0	[0..121]	[719..99]
gi\|38105262, gi\|... - gi\|39942446\|ref\|XP_360760.1\| hypothetical protein MG03303.4 [Magnaporthe grisea 70-15], gb\|EAA51708....	357.0	[0..69]	[719..30]
GRC3_GIBZE - Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 /... GRC3_GIBZE - Protein GRC3 OS=Gibberella zeae GN=GRC3 PE=3 SV=1	355.0	[0..34]	[704..2]
gi\|28920930, gi\|... - gi\|32421139\|ref\|XP_331013.1\| hypothetical protein [Neurospora crassa], gi\|28920930\|gb\|EAA30260.1\| pr... gi\|85092683 - gi\|85092683\|ref\|XP_959496.1\| hypothetical protein NCU02237 [Neurospora crassa OR74A]	348.0	[0..14]	[701..1]
NOL9 - nucleolar protein 9	346.0	[0..138]	[719..104]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRQRIESS NVPLSAFAVR QLTLSKAARK KDNSSGKKRS VSEEESQDKY EDEMKTEGEF  60
   61 PSYKHTLVQV VVPGVDHRTK LHSESSKNDS EITPDINRSK VNPQEYSEFS VASPQTISPS 120
  121 LPLNLDDETV SENVPHSPQS SNDAIPVIKI TEENSFRVKD TLYVGLHKDQ KLAMVGTFIF 180
  181 RSVRGKFQLF GATYSSACMS WFPLNAPLAF ATPVFSAIDN ALPAMQISEY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [231-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEDSLNLRSF AVPSYSPKEH EYELEPKDIL PNFETVIAFR ENENGLSKIA RVLPFAKRLF  60
   61 SFKNLLQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-736]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASSISNNFEI TPESWCSFSN QLLFSTSKSD YVVPRLMVCG PKGSGKSSFS RYITNRLLQQ  60
   61 YRHIAYLDLD PGQPEVVPSG HISLYYINSP LQGPVFARML FPTYMLRLHL GDISPQKDPD 120
  121 HYIACVTRLF AEYKDYIFNQ EISQKEIIPL IINCPGWIRG GGAELLSSIV DICQPTEVVY 180
  181 MSREDMKSSH REKKSIYQHK EYMPDFLSSR DEFQLTLLES TWQYLPDPNV NKVTSADNRM 240
  241 LGLLSYLYFN CNLQRWDFTT SLTACQPIAT AFKGSSKGID AVNIIGEPLN VNDVAKTING 300
  301 TLMALYACDT ASLDNSNTQR IVSSPEGIPL IINDGLPLDP NTSHCLGLIV LRTIDLKRNE 360
  361 FHFVGPLNLE LIKDAYAKSL KIVLERGRLE LPVYAMLDHR LAQYSELPYL DRNHDRVAVG 420
  421 AHRRRVRRNI IRRSTFVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2npiA
Description:	No description for 2npiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits