YRC Public Data Repository - Protein Structure Prediction

Protein:	sec20
Organism:	Schizosaccharomyces pombe
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec20.

Description	E-value	Query Range	Subject Range
gi\|40744364, gi\|... - gi\|67525023\|ref\|XP_660573.1\| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	215.0	[0..18]	[224..58]
gi\|39951915, gi\|... - gi\|39951915\|ref\|XP_363674.1\| hypothetical protein MGG_01600 [Magnaporthe grisea 70-15], gb\|EAA55949....	210.0	[0..6]	[224..51]
gi\|71022887, gi\|... - gi\|71022887\|ref\|XP_761673.1\| hypothetical protein UM05526.1 [Ustilago maydis 521], ref\|XP_403141.1\| ...	190.0	[0..14]	[226..52]
gi\|4502441, gi\|5... - gi\|558842\|gb\|AAC00020.1\| BCL2/adenovirus E1B 19kD-interacting protein 1 [Homo sapiens], gi\|4502441\|r...	186.0	[0..5]	[214..37]
gi\|32409305, gi\|... - gi\|38567025\|emb\|CAE76323.1\| hypothetical protein [Neurospora crassa], gi\|32409305\|ref\|XP_325133.1\| p... gi\|85116956 - gi\|85116956\|ref\|XP_965146.1\| hypothetical protein NCU00953 [Neurospora crassa OR74A]	183.0	[0..28]	[224..85]
gi\|7159589 - gi\|7159589\|emb\|CAB76200.1\| Sec20p [Candida albicans] gi\|68473533, gi\|... - gi\|68473533\|ref\|XP_719091.1\| hypothetical protein CaO19.5526 [Candida albicans SC5314], gi\|46440892\|...	181.0	[0..19]	[225..44]
gi\|66852416, gi\|... - gi\|71000124\|ref\|XP_754779.1\| protein transport membrane glycoprotein Sec20 [Aspergillus fumigatus Af... gi\|159127787 - gi\|159127787\|gb\|EDP52902.1\| protein transport membrane glycoprotein Sec20, putative [Aspergillus fum...	172.0	[0..16]	[224..55]
gi\|109079778 - gi\|109079778\|ref\|XP_001096579.1\| PREDICTED: similar to BCL2/adenovirus E1B 19kD interacting protein ...	169.0	[0..5]	[214..37]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVLNALEE KVVELQQSES VEVIKRHFRE FRKIWETARV ELEYSSIQLD SVLRYEKAVQ  60
   61 EYIRLNRRYR NKIASGEPWL PIAQEIGKIV DEEEITSPSD GSLQKRSMDN SGSWQSDDIY 120
  121 LTSASQVTAA MRDIHAQMVQ AVDMSAENAM ELSSSTNLLE TLQEKYFGVE DVLYTSKRII 180
  181 KSLKLSDRSD YFLVVSGFGF FIFVVVYLLF KRIVWPILSM FLWFLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.47
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits