YRC Public Data Repository - Protein Structure Prediction

Protein:	apc13
Organism:	Schizosaccharomyces pombe
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apc13.

Description	E-value	Query Range	Subject Range
gi\|49101743, gi\|... - gi\|67541368\|ref\|XP_664458.1\| hypothetical protein AN6854.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	145.0	[0..2]	[100..4]
gi\|42550851, gi\|... - gi\|46123019\|ref\|XP_386063.1\| hypothetical protein FG05887.1 [Gibberella zeae PH-1], gi\|42550851\|gb\|E...	137.0	[0..2]	[82..4]
gi\|39974289, gi\|... - gi\|39974289\|ref\|XP_368535.1\| hypothetical protein MGG_00709 [Magnaporthe grisea 70-15], gb\|EAA49051....	134.0	[0..2]	[82..6]
gi\|32421643, gi\|... - gi\|32421643\|ref\|XP_331265.1\| predicted protein [Neurospora crassa], gi\|28922180\|gb\|EAA31430.1\| predi... gi\|85098789 - gi\|85098789\|ref\|XP_960666.1\| hypothetical protein [Neurospora crassa OR74A]	120.0	[0..2]	[79..80]
gi\|116198821, gi... - gi\|88178845\|gb\|EAQ86313.1\| hypothetical protein CHGG_07566 [Chaetomium globosum CBS 148.51], gi\|1161...	115.0	[0..2]	[82..24]
gi\|66850987, gi\|... - gi\|70997195\|ref\|XP_753351.1\| Apc13 domain protein [Aspergillus fumigatus Af293], gi\|66850987\|gb\|EAL9... gi\|159126924 - gi\|159126924\|gb\|EDP52040.1\| Apc13 domain protein [Aspergillus fumigatus A1163]	109.0	[0..2]	[80..26]
gi\|111061362 - gi\|111061362\|gb\|EAT82482.1\| hypothetical protein SNOG_10147 [Phaeosphaeria nodorum SN15]	107.0	[0..2]	[82..10]
gi\|83772875 - gi\|83772875\|dbj\|BAE63003.1\| unnamed protein product [Aspergillus oryzae] gi\|169779343 - gi\|169779343\|ref\|XP_001824136.1\| hypothetical protein [Aspergillus oryzae RIB40]	104.0	[0..10]	[99..1]
gi\|90298436, gi\|... - gi\|90298436\|gb\|EAS28067.1\| hypothetical protein CIMG_09271 [Coccidioides immitis RS], gi\|119174583\|r...	101.0	[0..2]	[93..4]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSNYNYVHM NKPGVVLFAS DWLKDRLPVD DVEVRVEHLP PVTEDEMTIQ HSSANLILMK  60
   61 NKQLRHEPAW KDLELEDLVN AFAFIQGSSN AEGKNTIEDN FETDPFKSVK EAPMAPFLEA 120
  121 NRRHQGEHAS MRYFR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	85.102373
Match:	PF05839.2
Description:	No description for PF05839.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits