YRC Public Data Repository - Protein Structure Prediction

Protein:	mrp21
Organism:	Schizosaccharomyces pombe
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrp21.

Description	E-value	Query Range	Subject Range
gi\|42551526, gi\|... - gi\|46122993\|ref\|XP_386050.1\| hypothetical protein FG05874.1 [Gibberella zeae PH-1], gi\|42551526\|gb\|E...	125.0	[0..39]	[121..231]
gi\|39969059, gi\|... - gi\|39969059\|ref\|XP_365920.1\| hypothetical protein MG10140.4 [Magnaporthe grisea 70-15], gb\|EAA57465....	116.0	[0..40]	[121..176]
gi\|85108592 - gi\|85108592\|ref\|XP_962598.1\| hypothetical protein NCU06958 [Neurospora crassa OR74A] gi\|28924208, gi\|... - gi\|32413529\|ref\|XP_327244.1\| predicted protein [Neurospora crassa], gi\|28924208\|gb\|EAA33362.1\| predi...	111.0	[0..28]	[121..145]
gi\|71020321, gi\|... - gi\|71020321\|ref\|XP_760391.1\| hypothetical protein UM04244.1 [Ustilago maydis 521], ref\|XP_401859.1\| ...	107.0	[0..40]	[120..122]
gi\|207347922 - gi\|207347922\|gb\|EDZ73943.1\| YBL090Wp-like protein [Saccharomyces cerevisiae AWRI1631] MRP21 - Mitochondrial ribosomal protein of the small subunit; MRP21 exhibits genetic interactions with mutat... RT21_YEAST - 37S ribosomal protein MRP21, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ... gi\|190408909 - gi\|190408909\|gb\|EDV12174.1\| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae...	102.0	[0..48]	[121..103]
gi\|40738824, gi\|... - gi\|67539738\|ref\|XP_663643.1\| hypothetical protein AN6039.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	102.0	[0..43]	[121..140]
gi\|44985511 - gi\|44985511\|gb\|AAS54207.1\| AGL284Cp [Ashbya gossypii ATCC 10895] gi\|44985511, gi\|... - gi\|45200813\|ref\|NP_986383.1\| AGL284Cp [Ashbya gossypii ATCC 10895], gi\|44985511\|gb\|AAS54207.1\| AGL28...	100.0	[0..45]	[121..504]
orf19.2852, orf1... - orf19.2852 CGDID:CAL0005153 Assembly 19, Contig19-10161 (104412, 103831) CDS, reverse complemented, ... gi\|68480472, gi\|... - gi\|68480578\|ref\|XP_715783.1\| potential mitochondrial ribosomal protein S21 [Candida albicans SC5314]... gi\|238879756 - gi\|238879756\|gb\|EEQ43394.1\| conserved hypothetical protein [Candida albicans WO-1]	98.0	[0..45]	[121..118]
gi\|49643395, gi\|... - gi\|50308515\|ref\|XP_454260.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643395\|emb\|CAG9934... gi\|49643395 - gi\|49643395\|emb\|CAG99347.1\| KLLA0E06909p [Kluyveromyces lactis]	86.0	[0..45]	[121..79]
gi\|49526302 - gi\|49526302\|emb\|CAG59926.1\| unnamed protein product [Candida glabrata] gi\|50289127, gi\|... - gi\|50289127\|ref\|XP_446993.1\| unnamed protein product [Candida glabrata], gi\|49526302\|emb\|CAG59926.1\|...	82.0	[0..45]	[121..75]

Back

Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSYFPGVL GVRWVHTNRK LQKRKEEHGA FQDSLHFMIP AAETKDLGAS VTVGNSLTRA  60
   61 FRQVDRICQR NNVPRLFRSQ RFYEKPSEKR SRVRSERHRA RFRAGIVRLV NLAKNMRRWG 120
  121 Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.769	a.29.11	Description not found.
View	Download	0.690	a.47.1	STAT
View	Download	0.688	a.7.8	GAT domain
View	Download	0.682	a.7.12	Description not found.
View	Download	0.672	a.25.1	Ferritin-like
View	Download	0.552	c.51.3	B12-dependend dehydatases associated subunit
View	Download	0.491	a.25.1	Ferritin-like
View	Download	0.454	a.25.1	Ferritin-like
View	Download	0.432	a.2.7	tRNA-binding arm

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits