YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1494.08c
Organism:	Schizosaccharomyces pombe
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1494.08c.

Description	E-value	Query Range	Subject Range
gi\|46128531, gi\|... - gi\|46128531\|ref\|XP_388819.1\| hypothetical protein FG08643.1 [Gibberella zeae PH-1], gi\|42549390\|gb\|E...	302.0	[0..10]	[243..5]
gi\|44985504, gi\|... - gi\|45200806\|ref\|NP_986376.1\| AGL291Wp [Ashbya gossypii ATCC 10895], gi\|44985504\|gb\|AAS54200.1\| AGL29... gi\|44985504 - gi\|44985504\|gb\|AAS54200.1\| AGL291Wp [Ashbya gossypii ATCC 10895]	278.0	[0..6]	[244..9]
YBI6_YEAST - Uncharacterized protein YBL086C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBL086C ... gi\|190408905 - gi\|190408905\|gb\|EDV12170.1\| hypothetical protein SCRG_03044 [Saccharomyces cerevisiae RM11-1a] YBL086C - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell pe...	278.0	[0..7]	[244..8]
gi\|73959959 - gi\|73959959\|ref\|XP_547251.2\| PREDICTED: similar to early estrogen-induced gene 1 protein [Canis fami...	247.0	[0..6]	[193..1]
gi\|94369863 - gi\|94369863\|ref\|XP_283903.5\| PREDICTED: hypothetical protein LOC329739 [Mus musculus]	245.0	[0..1]	[193..205]
gi\|111059636 - gi\|111059636\|gb\|EAT80756.1\| hypothetical protein SNOG_11712 [Phaeosphaeria nodorum SN15]	243.0	[0..17]	[238..24]
gi\|114558236 - gi\|114558236\|ref\|XP_525177.2\| PREDICTED: hypothetical protein [Pan troglodytes]	242.0	[0..1]	[193..135]
gi\|109467451 - gi\|109467451\|ref\|XP_001072157.1\| PREDICTED: similar to early estrogen-induced gene 1 protein [Rattus...	242.0	[0..5]	[193..101]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFIPKARR PTFELHLRIH DVVNIPLITG VIFVKWNIEG IHSRHANDQT EAEPVLEHRV  60
   61 TWEYETCVSV RMIIDNDNLL KDKFLILQVL CDSHTDSGVI RLGILKINLT EYVYVGQDTR 120
  121 KYLLADSKIN ATIRIGISLK QTSGNKDFRV SKTLGKP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.53
Match:	2q3xA
Description:	No description for 2q3xA was found.

Predicted Domain #2

Region A:
Residues: [158-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVFSGLTGLL TDGKELKRRD DEVYTSTGLA SAWAEKMLHS IKDFNQKTTV FHMHTRNNKY  60
   61 DTREIVDDIF FGGTGWAEPP KIADIVDAAG DTDLISLEIR QKSWVLPSEK VLNKRLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits