YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1281.03c
Organism:	Schizosaccharomyces pombe
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1281.03c.

Description	E-value	Query Range	Subject Range
EMC4_DANRE - ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2 SV=1	227.0	[0..16]	[187..18]
gi\|57108075 - gi\|57108075\|ref\|XP_535416.1\| PREDICTED: similar to CG11137-PA [Canis familiaris]	227.0	[0..19]	[187..13]
gi\|39944280, gi\|... - gi\|39944280\|ref\|XP_361677.1\| hypothetical protein MGG_04151 [Magnaporthe grisea 70-15], gb\|EAA50392....	222.0	[0..10]	[185..1]
gi\|114656164 - gi\|114656164\|ref\|XP_510280.2\| PREDICTED: similar to TMEM85 protein isoform 3 [Pan troglodytes]	221.0	[0..14]	[187..12]
gi\|12834476 - gi\|12834476\|dbj\|BAB22926.1\| unnamed protein product [Mus musculus]	219.0	[0..19]	[187..13]
gi\|47213485 - gi\|47213485\|emb\|CAF91142.1\| unnamed protein product [Tetraodon nigroviridis]	218.0	[0..18]	[187..27]
gi\|90077506 - gi\|90077506\|dbj\|BAE88433.1\| unnamed protein product [Macaca fascicularis] TMEM85 - transmembrane protein 85 TMM85_PONPY - Transmembrane protein 85 - Pongo pygmaeus (Orangutan) gi\|109080509 - gi\|109080509\|ref\|XP_001087244.1\| PREDICTED: similar to CG11137-PA isoform 2 [Macaca mulatta] EMC4_PONAB - ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2 SV=1 ENSCJAT00000041516 - null	218.0	[0..19]	[187..13]
EMC4_BOVIN - ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2 SV=1 gi\|149692100 - gi\|149692100\|ref\|XP_001503724.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-... gi\|194039184, gi... - gi\|194039200\|ref\|XP_001927127.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-...	218.0	[0..19]	[187..13]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHINEETDWI DLVKPALAKK PKKIVDNSDK FPTPRGFQQK SLVSKNIHSG NSASSTSIFA  60
   61 KREEELQKDL LLKKAWELAY SPLKQIPMNA ILAYMSGNSL QIFSIMTTLM LLVNPLKAIT 120
  121 STGSAFTPFK GTHPGTLWPA MGAYILFQLL LMGIGVYKLQ RMGLLPTTTS DWLAWEVSKV 180
  181 FMDRSYGPSK TVL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	1yq3D
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits