YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC61.04c
Organism:	Schizosaccharomyces pombe
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC61.04c.

Description	E-value	Query Range	Subject Range
gi\|114602515, gi... - gi\|114602517\|ref\|XP_518011.2\| PREDICTED: smooth muscle cell associated protein 5 isoform 3 [Pan trog... YIPF5_PONPY - Protein YIPF5 - Pongo pygmaeus (Orangutan) YIPF5 - Yip1 domain family, member 5 YIPF5_PONAB - Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1	243.0	[0..5]	[225..32]
YIPF5_MACFA - Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1 CCDS4279.1_1 - null gi\|109079155, gi... - gi\|109079159\|ref\|XP_001098831.1\| PREDICTED: similar to smooth muscle cell associated protein 5 isofo...	242.0	[0..5]	[225..32]
gi\|57042739 - gi\|57042739\|ref\|XP_535226.1\| PREDICTED: similar to smooth muscle cell associated protein 5 [Canis fa...	242.0	[0..5]	[225..32]
gi\|115371747, gi... - gi\|116175279\|ref\|NP_001070693.1\| Yip1 domain family, member 5 [Sus scrofa], gi\|115371747\|gb\|ABI96198...	242.0	[0..5]	[225..32]
YIPF5_XENLA - Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1	241.0	[0..5]	[225..31]
YIPF5_XENTR - Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1	240.0	[0..5]	[225..31]
gi\|47219252 - gi\|47219252\|emb\|CAG11714.1\| unnamed protein product [Tetraodon nigroviridis]	235.0	[0..4]	[225..30]
gi\|50755224 - gi\|50755224\|ref\|XP_414661.1\| PREDICTED: similar to Yip1 domain family, member 5 [Gallus gallus]	233.0	[0..5]	[225..30]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYYNNPANL QYYDYSYTAD NSFNTQSRAA GFYDEPLHEP LSQGWLAAFS TSGYPGEPSL  60
   61 LEELEINFGH IKQKTTHVLN PFKHVDVHIM DDTDMAGPIL FCLLFSTFLS LHGRSHFGYI 120
  121 YGIALLGSLS LHFVLRLMSA KNLFFTRTVS VLGYSLLPLV VIAFFKNIFT FNGIAGYALA 180
  181 ALACIWCTYA ASAMFVGILQ VNNMRFLVAY PIALFYGVFA VITVFSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.568636
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits