YRC Public Data Repository - Protein Structure Prediction

Protein:	ucp10
Organism:	Schizosaccharomyces pombe
Length:	427 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ucp10.

Description	E-value	Query Range	Subject Range
gi\|40746256, gi\|... - gi\|67516977\|ref\|XP_658374.1\| hypothetical protein AN0770.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	260.0	[0..5]	[427..55]
gi\|7486906, gi\|3... - pir\|\|T01898 hypothetical protein T12H20.9 - Arabidopsis thaliana, gi\|3600032\|gb\|AAC35520.1\| contain...	251.0	[0..19]	[424..18]
gi\|169783122 - gi\|169783122\|ref\|XP_001826023.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774767 - gi\|83774767\|dbj\|BAE64890.1\| unnamed protein product [Aspergillus oryzae]	249.0	[0..5]	[426..55]
gi\|50754935 - gi\|50754935\|ref\|XP_414548.1\| PREDICTED: similar to protein expressed in T-cells and eosinophils in a...	247.0	[0..5]	[426..98]
gi\|34784061 - gi\|34784061\|gb\|AAH56714.1\| Zgc:194819 protein [Danio rerio]	246.0	[0..6]	[426..12]
gi\|109079875 - gi\|109079875\|ref\|XP_001090859.1\| PREDICTED: similar to UBX domain containing 8 [Macaca mulatta]	245.0	[0..5]	[382..183]
gi\|42548787, gi\|... - gi\|46130646\|ref\|XP_389103.1\| hypothetical protein FG08927.1 [Gibberella zeae PH-1], gi\|42548787\|gb\|E...	243.0	[0..5]	[424..55]
gi\|58390101, gi\|... - gi\|58390101\|ref\|XP_317491.2\| AGAP007977-PA [Anopheles gambiae str. PEST], gi\|55237707\|gb\|EAA12408.2\|... AGAP007977-PA - Fas-associated factor\|protein_coding\|3R:3624887:3626278:1\|gene:AGAP007977	240.0	[0..5]	[382..9]
gi\|39970947, gi\|... - gi\|86196666\|gb\|EAQ71304.1\| hypothetical protein MGCH7_ch7g711 [Magnaporthe grisea 70-15], gi\|3997094...	239.0	[0..5]	[426..55]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSRKQEAI DELRNSLDVP ADTAQSVLES FNWDVQEAIE SLTGESSRVD RNSKLGLSFG  60
   61 VFQSVFSLLF SGLHKLWMIL SRVPLISTFI PIFGTTKRVL SPADTANKLV QNLEEQYGTE 120
  121 HIDFF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGGYMEALT RIKRNYGVAL LFFTSSKNDD SETFSRSVLM NQELKEFLNR RNILCWTGDV  60
   61 CEDEAFRGSR QFHCTKFPSA VLVMYSPQLS ELVVAAQLHG CLDSSSIITN LTNALAKHLP 120
  121 SLERFRSERE AREAARELRR QQDNAYQASL ARDRERQAFA RAEEERLAKE KEEREIVQKK 180
  181 KKQYRAWLAS NLPPEPSSED EPARLSIRFP DGSRAVRRFK KDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [349-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVESVYNYVD YMLFEKEEPE EFGRATSSSN PVTPPSDYKH DFHFQLYSSL PRALLKPSVA  60
   61 ISTNKAIFPN GTVVVELDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	2dzkA
Description:	No description for 2dzkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits